1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgctgcaagtttgttcttttaatgcatgtgcacttacaccaggcccatttgtgaaatgcttaattgcaattttatgatatttcattttcaacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG
species | Zea mays |
transcript | GRMZM2G101438_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|76912468|gb|DV164746.1|DV164746
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|78075681|gb|DV504115.1|DV504115
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|78075680|gb|DV504114.1|DV504114
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GAGGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|101399011|gb|EB821378.1|EB821378
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|71436246|gb|DR817296.1|DR817296
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTEST: gi|116819988|gb|EC863161.1|EC863161
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATT
EST: GATGAAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACEST: gi|76289409|gb|DV028977.1|DV028977
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
EST: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT GGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
genomic: GATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAATgtgagtcact ... aacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGAC
ccatttgtgaaatgcttaattgcaattttatgatatttcattttcaacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG
gcttaat putative branch site (score: 19)
ttaattgcaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgcaagtttgttcttttaatgcatgtgcacttacaccaggcccatttgtgaaatgcttaattgcaattttatgatatttcattttcaacattccagGGCTACCATGGTGATACATCTGCTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ttgctgc
- - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - -ccaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa