1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaactgcgtaccattgtgaaatgtcacataccgttaaaatctatcatcatatttcttttttttacttattattgatgctttcatttcgatcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTGCCAGAAAGCGTGCAAGCTACGTGACTCAAGTTTTATAGAATTTAGTTG
species | Zea mays |
transcript | GRMZM2G101413_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|76914884|gb|DV165734.1|DV165734
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TGGGTGCAA-CAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|12971772|gb|BG267650.1|BG267650
genomic: TGG-TGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|71332207|gb|DR803027.1|DR803027
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|76014786|gb|DT941956.1|DT941956
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|71332206|gb|DR803026.1|DR803026
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTATTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|18181443|gb|BM382653.1|BM382653
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|88753295|gb|DY537436.1|DY537436
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTATTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|101390410|gb|EB817139.1|EB817139
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTATTATTATTTTTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|113702315|gb|EE679819.1|EE679819
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|71316813|gb|DR795094.1|DR795094
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|18180216|gb|BM381426.1|BM381426
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|60346227|gb|DN213200.1|DN213200
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|76012114|gb|DT939284.1|DT939284
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|60348027|gb|DN215000.1|DN215000
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|211407829|gb|FL480469.1|FL480469
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|149082455|gb|EE171645.2|EE171645
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|50332292|gb|CO527418.1|CO527418
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|148943936|gb|EC889016.2|EC889016
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|74243070|gb|DT650984.1|DT650984
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTEST: gi|4647085|gb|AI622160.1|AI622160
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|67014344|gb|CO443093.1|CO443093
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACANTGTGAAGCTCGAGTTGCCTGCTTGAGCATGNCT-CGTTTEST: gi|60358513|gb|DN225486.1|DN225486
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATG-CTTCGTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG T-GGAAGAACAEST: gi|148943937|gb|EC889017.2|EC889017
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACA
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|9743078|gb|BE519226.1|BE519226
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|76012125|gb|DT939295.1|DT939295
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTEST: gi|148990937|gb|EE032363.2|EE032363
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTT
EST: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAG TTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTT
genomic: TTGGTGCAAACAGCTCTGTATGCAGATTTCTTTTACTATTATTTCTTAAGgtaaactgcg ... atcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTT
tcatcatatttcttttttttacttattattgatgctttcatttcgatcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTGCCAGAAAGCGTGCAAGCTACGTGACTCAAGTTTTATAGAATTTAGTTG
tattgat putative branch site (score: 3)
atatttctttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactgcgtaccattgtgaaatgtcacataccgttaaaatctatcatcatatttcttttttttacttattattgatgctttcatttcgatcattgcagTTGGAAGAACAATGTGAAGCTCGAGTTGCCTGCTTGAGCATGCTTCGTTTTGCCAGAAAGCGTGCAAGCTACGTGACTCAAGTTTTATAGAATTTAGTTG
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