Sequence
atgc intronic sequence ATGC exonic sequence...gtgtattaatcataaataaatatatcaggtgtcaagtgactgtagacaaatgcaaagtagacatacttccctattgactgaacagtcttaatctttgcagGCTTTGCAATTAACAAAGTTTGATTATAGGCTCACTAGCGATCTTGATGAAGATTTGCAAAAGTTACGTTGCCGAGTAAATTTTCATGCTTTAAAATTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101181_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 5
---gtgtattaatcataaataaatatat-caggtgtcaagtgactgtagacaaatgcaaagtagacatacttccctattgactgaacagtcttaatctttgcagGCTTTGCAATTAACAAAGTTTGATTATAGGCTCACTAGCGATCTTGATGAAGATTTGCAAAAGTTACGTTGCCGAGTAAATTTTCATGCTTTAAAATTTA
|| || |||| | || | | ||| | || || || | | |||| | | | || ||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||||| |||||||| |||||||||||||| ||||| |||| |||||
tggaaacatctatatgaaatcattagacacgtatgtggaatgctcgt-gatatgta-aaagcaaagaggtttgcctatgcacttaacagt-ttaat-tttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAAGATTTA
upper sequence: GRMZM2G101181_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 5
--gtgtattaatcataaataaatatatcaggtgtcaagtgactgtagacaaatgcaaagtagacatacttccctattgactgaacagtctt----aatctttgcagGCTTTGCAATTAACAAAGTTTGATTATAGGCTCACTAGCGATCTTGATGAAGATTTGCAAAAGTTACGTTGCCGAGTAAATTTTCATGCTTTAAAATTTA
|| || | | || | | | | || | | | | | || | | | | || | || | | | | || |||||||| | | || || |||||||||||||| ||||| | | | |||||||||| |||||||||| |||||||| || |||| ||||||||||| ||| |
atgtaacttggttttcaagctaga-gtgatgtatttattttttattt-----tgtaccttccaatttgttttcaatgaggcaattaatgctttgaaaattttgcagGTTGTACAGTTGACAAAGTTTGATTACAGGCTTGCAAATAACATTGATGAAGAGCTGCAAAAGTTGCGTTGCCGGGTCAATTATCATGCTTTAAGATTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32805308|gb|CD957544.1|CD957544EST: TGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGA GCTTTGCAATTA
genomic: TGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGAgtaagtaacc ... atctttgcagGCTTTGCAATTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaaatgcaaagtagacatacttccctattgactgaacagtcttaatctttgcagGCTTTGCAATTAACAAAGTTTGATTATAGGCTCACTAGCGATCTTGATGAAGATTTGCAAAAGTTACGTTGCCGAGTAAATTTTCATGCTTTAAAATTTA
tctttgc CT-rich tract
ttaatcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtattaatcataaataaatatatcaggtgtcaagtgactgtagacaaatgcaaagtagacatacttccctattgactgaacagtcttaatctttgcagGCTTTGCAATTAACAAAGTTTGATTATAGGCTCACTAGCGATCTTGATGAAGATTTGCAAAAGTTACGTTGCCGAGTAAATTTTCATGCTTTAAAATTTA
- - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaca