1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttacttaactaataacctatctatgtatctgtagtttcttgttcttgttaattgtaccatatatctctcaaacggtgcatatgtttccagCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC
species | Zea mays |
transcript | GRMZM2G100652_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAG CCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCEST: gi|78076032|gb|DV504466.1|DV504466
genomic: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAGgtttacttaa ... atgtttccagCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATC
EST: CCATCTGTTGCTATCGGCAGGGATCTTTCA-GCTGCTCGTGTTACAGCAG CCAATAAA-TACGCCTTTGGAEST: gi|87156413|gb|DY401202.1|DY401202
genomic: CCATCTGTTGCTATCGGCAGGGATCTT-CAAGCTGCTCGTGTTACAGCAGgtttacttaa ... atgtttccagCCAATAAAATACGCCTTTGGA
EST: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAG CCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCEST: gi|148981111|gb|EE027429.2|EE027429
genomic: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAGgtttacttaa ... atgtttccagCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATC
EST: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAG CCAATAAAATACGCCTTTGGAAACA-GGGTGTTGACTC
genomic: ACCATCTGTTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAGgtttacttaa ... atgtttccagCCAATAAAATACGCCTTTGGAA-CAAGGGTGTTGACTC
ttcttgttcttgttaattgtaccatatatctctcaaacggtgcatatgtttccagCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC
tgttaat putative branch site (score: 3)
tgtttcc putative PPT
ttgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacttaactaataacctatctatgtatctgtagtttcttgttcttgttaattgtaccatatatctctcaaacggtgcatatgtttccagCCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA