1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatcacctacctctagtgtcagtgtcgatacttaaacagtacaacagaaattttactaaagggttcatgcagttatgcatacagaattgtaattcttgtcatattccttgagtaacccagctttagttcaattcgtttggggtggtttcatctcacaagaatgcttatcaaatgctctttgcttctgtagGCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACAGCCAGAGCTGGTCAATCTGGTATAGTTACTAGCCTATACACAGAGGCAA
species | Zea mays |
transcript | GRMZM2G100043_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCTGCCCGTGGGCTTGATGTTCCAAAAGTTTCTCATGTCATTCAG GCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACAEST: gi|16921340|gb|BM075104.1|BM075104
genomic: ATGCTGCTGCCCGTGGGCTTGATGTTCCAAATGTTTCTCATGTCATTCAGgtatcaccta ... gcttctgtagGCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACA
EST: ATGCTGCTGCCCGTGGGCTTGATGTTCCAAATGTTTCTCATGTCATTCAG GCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACA
genomic: ATGCTGCTGCCCGTGGGCTTGATGTTCCAAATGTTTCTCATGTCATTCAGgtatcaccta ... gcttctgtagGCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACA
tttggggtggtttcatctcacaagaatgcttatcaaatgctctttgcttctgtagGCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACAGCCAGAGCTGGTCAATCTGGTATAGTTACTAGCCTATACACAGAGGCAA
atctcac putative branch site (score: 32)
tgctctttgcttct putative PPT
ttatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacctacctctagtgtcagtgtcgatacttaaacagtacaacagaaattttactaaagggttcatgcagttatgcatacagaattgtaattcttgtcatattccttgagtaacccagctttagttcaattcgtttggggtggtttcatctcacaagaatgcttatcaaatgctctttgcttctgtagGCAGAATTTGCTGCCTGTGCTGTTGATTTTTTGCACAGGGTGGGCCGCACAGCCAGAGCTGGTCAATCTGGTATAGTTACTAGCCTATACACAGAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT