1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttatttataactgggaaggttttagcctttgacaataaccagtttcgattttcaaccttgttatgtgaagatgtccatgttgatggcttgtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATT
species | Zea mays |
transcript | GRMZM2G099547_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|60394679|gb|DN227549.1|DN227549
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|101392937|gb|EB818399.1|EB818399
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCTTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|211360252|gb|FL253401.1|FL253401
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|60348216|gb|DN215189.1|DN215189
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|12045916|gb|BF728146.1|BF728146
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|148980593|gb|EE027217.2|EE027217
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|32846204|gb|CD985885.1|CD985885
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|86471527|gb|DY237897.1|DY237897
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|71433975|gb|DR815025.1|DR815025
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|60337078|gb|DN204051.1|DN204051
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGGCAAG -TTCTTGGCCTAAGEST: gi|60337543|gb|DN204516.1|DN204516
genomic: TGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGG-CAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAG
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|71433974|gb|DR815024.1|DR815024
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|60351167|gb|DN218140.1|DN218140
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|32928940|gb|CF033752.1|CF033752
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|16920282|gb|BM074585.1|BM074585
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|71303362|gb|DR787781.1|DR787781
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|6563795|gb|AW231327.1|AW231327
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|71757029|gb|DR954966.1|DR954966
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|16925502|gb|BM078570.1|BM078570
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|78180203|gb|DV550576.1|DV550576
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAAATGACCCEST: gi|6827273|gb|AW330916.1|AW330916
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGATTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|78117103|gb|DV535490.1|DV535490
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACEST: gi|78075508|gb|DV503942.1|DV503942
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAGATGACCCTTCNAAGAGGATGGAATAACEST: gi|50325142|gb|CO520268.1|CO520268
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAAC
EST: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAG GTTCTTGGCCTAAGACTGACTCAG
genomic: TTGCTGCTCGAGGGGAAGCTAACAGTGAGTTGCTAGAATTTATGGGCAAGgtgattttct ... gtgaaagcagGTTCTTGGCCTAAGACTGACTCAG
tcgattttcaaccttgttatgtgaagatgtccatgttgatggcttgtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATT
tgttgat putative branch site (score: 116)
ttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatttataactgggaaggttttagcctttgacaataaccagtttcgattttcaaccttgttatgtgaagatgtccatgttgatggcttgtgaaagcagGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat