1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcttgtaatgatagtattcttgtcctccagaaccgtagcctatcttctagcgttattacttgaaaatggtcttgatggatatgtatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGCAGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTAT
species | Zea mays |
transcript | GRMZM2G099317_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTAGGAGCGTCAG GCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGEST: gi|148954856|gb|EC900331.2|EC900331
genomic: CCTAGGAGCGTCAGgtgcttgtaa ... tatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCG
EST: GAAAGAGGGCATATAGAAAGAAATTGCCAGAACAGTCCTAGGAGCGTCAG GCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGAAAGAGGTCGEST: gi|113816600|gb|DW936623.1|DW936623
genomic: GAAAGAGGGCATATAGAAAGAAATTGCCAGAACAGTCCTAGGAGCGTCAGgtgcttgtaa ... tatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCG
EST: GAAAGAGGGCATATAGAAAGAAATTGCCAGAACAGTCCTAGGAGCGTCAG GCGTGAAAGAAGTTACTCACGNTCCCCA
genomic: GAAAGAGGGCATATAGAAAGAAATTGCCAGAACAGTCCTAGGAGCGTCAGgtgcttgtaa ... tatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCA
cctatcttctagcgttattacttgaaaatggtcttgatggatatgtatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGCAGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTAT
tcttgat putative branch site (score: 4)
ttattacttgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgtaatgatagtattcttgtcctccagaaccgtagcctatcttctagcgttattacttgaaaatggtcttgatggatatgtatatttcagGCGTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGCAGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT