1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...atttgatctccaaattttcaccaaaatgatggtttggcttgatatgccccttgatggttgttgtctggatatttttctaatgaacctgaatcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAAACATCAGTTGCTACTCAAACCGAGAGGAAAGTAACAGTAACTGTTGAAA
species | Zea mays |
transcript | GRMZM2G099056_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGTGCAAAG GAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGCCAAGAAEST: gi|20299920|gb|BQ162863.1|BQ162863
genomic: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGGGCAAAGgtgtatatca ... tcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAA
EST: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGTGCAAAG GAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGCCAAGAAEST: gi|20301101|gb|BQ164044.1|BQ164044
genomic: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGGGCAAAGgtgtatatca ... tcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAA
EST: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGTGCAAAG GAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGCCAAGAAEST: gi|20299941|gb|BQ162884.1|BQ162884
genomic: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGGGCAAAGgtgtatatca ... tcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAA
EST: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGTGCAAAG GAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGCCAAGAA
genomic: TTCCAAAAGTTGTTGGAATTGATATTGTGGAGCTAGCTCTTTGGGCAAAGgtgtatatca ... tcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAA
gccccttgatggttgttgtctggatatttttctaatgaacctgaatcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAAACATCAGTTGCTACTCAAACCGAGAGGAAAGTAACAGTAACTGTTGAAA
ttctaat putative branch site (score: 85)
tccttttt putative PPT
atatttttctaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgatctccaaattttcaccaaaatgatggtttggcttgatatgccccttgatggttgttgtctggatatttttctaatgaacctgaatcctttttagGAAAACACACTGACCATAGATAATCAAGTGAGTACCCAAGATGGTCAAGAAACATCAGTTGCTACTCAAACCGAGAGGAAAGTAACAGTAACTGTTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - ttcacca
- - - - - - - - - - - - aatgatg
- - - - - - - - - - - - - - - - - - - - - tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgaa