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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaggctcatgtacagccccttatctaaattgatatttcttgtgaggtccttggagttcatttgtccattttctttcctttatttattgcttcctaaccttataaggtcttcgatatcaccacctggaagcaaacagAAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGACATACCAGGGGGGAGGTTGGGTCCGCAATGGATTCGGCCCACACCCCCAA

Basic information

species Zea mays
transcript GRMZM2G098815_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449728|gb|DR830778.1|DR830778
EST:     AGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGA                         AAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGAC
genomic: AGTGCTATACCAGATCCAGACGTCCGTCAAAGTTGTGCAAATTCATCAGAgtatgtaggc ... aagcaaacagAAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgcttcctaaccttataaggtcttcgatatcaccacctggaagcaaacagAAATCTGCGTCTGATGATAGAGATACTACTATTTCTGTTTTACTCGAAGACATACCAGGGGGGAGGTTGGGTCCGCAATGGATTCGGCCCACACCCCCAA
         tcctaac  putative branch site (score: 1)
                 ttataa  TA-rich tract