1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acagttccatcttttacatccttgtgatggtaccaaactggattaataagataaccatttaatgctgtcggttttcttctcttgattttctcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGATCCTCTATGGGGTCCTATAGCTGCTGCACCACCCAAAAGCGCAGCAAA
species | Zea mays |
transcript | GRMZM2G098042_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|87156015|gb|DY400804.1|DY400804
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|22545700|gb|BU098059.1|BU098059
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|71436505|gb|DR817555.1|DR817555
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|37381021|gb|CF627365.1|CF627365
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|60346438|gb|DN213411.1|DN213411
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|26558286|gb|CA830521.1|CA830521
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGEST: gi|71757873|gb|DR955810.1|DR955810
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
EST: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTG TTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
genomic: CAACATACAGGCTGCACAGAAACGTCCAGTGGCGCAACCAAAGCAAGCTGgtaagtagct ... tcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACG
ataagataaccatttaatgctgtcggttttcttctcttgattttctcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGATCCTCTATGGGGTCCTATAGCTGCTGCACCACCCAAAAGCGCAGCAAA
ttttcttctcttgatt CT-rich tract
atttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagttccatcttttacatccttgtgatggtaccaaactggattaataagataaccatttaatgctgtcggttttcttctcttgattttctcaaatgcagTTGCAAACTCATCTAAATCCAACCCACTAAAAGCGCCAAAATCAGAAGACGATCCTCTATGGGGTCCTATAGCTGCTGCACCACCCAAAAGCGCAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - tacatcc
- - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - -aagataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc