1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcatattgagtacgccatagtgaaatttactcccaagtgatctcatatgcttatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATTCAAAATGCAAGTTTAAAGCCATTACACACC
species | Zea mays |
transcript | GRMZM2G097987_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|211150923|gb|FL213279.1|FL213279
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|13126561|gb|BG317131.1|BG317131
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: GGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|13126560|gb|BG317130.1|BG317130
genomic: GGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: TGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|211293764|gb|FL459861.1|FL459861
genomic: TGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|13126549|gb|BG317119.1|BG317119
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|16377683|gb|BI992052.1|BI992052
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|5819257|gb|AI987463.1|AI987463
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTATCACTGGATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: GATGATAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: GATGATAAGAGgtaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
aatttactcccaagtgatctcatatgcttatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATTCAAAATGCAAGTTTAAAGCCATTACACACC
tttaattttctcct CT-rich tract
atatgcttatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatattgagtacgccatagtgaaatttactcccaagtgatctcatatgcttatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATTCAAAATGCAAGTTTAAAGCCATTACACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT