1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgtgttatgaaaataaaatacctgtaaatgttatatagccaagataagatgtatatgcattagttccaataacgaaaacctggttttactgtttttcagGACATCATGCAACATAAATTAGTGTTTATCGAAACACCAGATGTCGTTGAGACAACATTGGCTCTTGATAACTACAGAAAGGCATGTGATTGTGGAAGAG
species | Zea mays |
transcript | GRMZM2G097605_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTATATGGATGGCATTGTCAACAGCTGGCMCGAAATGGGAATTCTGCAG GACATCATGCAACATAAATTAGTGTTTATCGAA
genomic: CCTATATGGATGGCATTGTCAACAGCTGGCACGAAATGGGAATTCTGCAGgttatttctt ... tgtttttcagGACATCATGCAACATAAATTAGTGTTTATCGAA
taagatgtatatgcattagttccaataacgaaaacctggttttactgtttttcagGACATCATGCAACATAAATTAGTGTTTATCGAAACACCAGATGTCGTTGAGACAACATTGGCTCTTGATAACTACAGAAAGGCATGTGATTGTGGAAGAG
caataac putative branch site (score: 15)
ttttactgtttttc putative PPT
tgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgttatgaaaataaaatacctgtaaatgttatatagccaagataagatgtatatgcattagttccaataacgaaaacctggttttactgtttttcagGACATCATGCAACATAAATTAGTGTTTATCGAAACACCAGATGTCGTTGAGACAACATTGGCTCTTGATAACTACAGAAAGGCATGTGATTGTGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -aaataaa
- - - - - - - - - - acctgta
- - - - - - - - - - - - - - - - - - - - -aagataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgaaa