1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...cttcttttcactatttgatagcttatctgtgtaaatagtttctcatttctgtctataattgtgcatacagtgatattggtacttttgtattttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGGCTGTTTGGGATTAAAGTTGGAAATTTCTG
species | Zea mays |
transcript | GRMZM2G096553_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTTGGGTTTGCAGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAG GTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGGEST: gi|32931819|gb|CF036631.1|CF036631
genomic: CATTTGGGTTTGCAGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAGgcatgtattc ... tttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGG
EST: AGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAG GTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTCGCTCTTAACAAGCGGEST: gi|31353291|gb|CD437648.1|CD437648
genomic: AGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAGgcatgtattc ... tttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGG
EST: CATTTGGGTTTGCAGGTACTTCGGATAAGCGTGCTGTTACTACACAGCAG GTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGG
genomic: CATTTGGGTTTGCAGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAGgcatgtattc ... tttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGG
tttctgtctataattgtgcatacagtgatattggtacttttgtattttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGGCTGTTTGGGATTAAAGTTGGAAATTTCTG
cttttgtatttttt CT-rich tract
atattggtacttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcttttcactatttgatagcttatctgtgtaaatagtttctcatttctgtctataattgtgcatacagtgatattggtacttttgtattttttattagGTAACTGTATTCAAGGTGCAAGCCAGTAAGTTGCTTGCTCTTAACAAGCGGCTGTTTGGGATTAAAGTTGGAAATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT