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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtataccaactctttgaccctctatctaatatatgacttaatgaagggactcatttggattttctttcagCTACGTCCTAGGTGCTGTTTTTCTTCAGCTCTGCCAAGTTTTGCAACTTGCAGAACATCCAGTTGTTCAGAAACTTGTAGATCCCAGTCTTTTCATCCAT

Basic information

species Zea mays
transcript GRMZM2G096389_T05
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371508|gb|FL288118.1|FL288118
EST:     AAGAAGGCTTATCTTCTTATCGATTTCTCTGACCATCTCCAAATAAGTGT                         CTACGTCCTAGGTGCTGTTTTTCTTCAGCTCTGCCAAGTTTTGCAACTTGC
genomic: AAGAAGGCTTATCTTCTTATCGATTTCTCTGACCATCTCCAAATAAGTGTgtgagtatac ... tttctttcagCTACGTCCTAGGTGCTGTTTTTCTTCAGCTCTGCCAAGTTTTGCAACTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccctctatctaatatatgacttaatgaagggactcatttggattttctttcagCTACGTCCTAGGTGCTGTTTTTCTTCAGCTCTGCCAAGTTTTGCAACTTGCAGAACATCCAGTTGTTCAGAAACTTGTAGATCCCAGTCTTTTCATCCAT
                                            ttttctttc  CT-rich tract
           taatatatgacttaat  TA-rich tract