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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcatttagctttctaatcaggcttagtggtgtagatttaatgcttgataaatactaatttgatatttctactttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTAT

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 3'ss of exon 5
gtaatgcatttagctttctaatcaggcttagtggtgtagattta-atgcttg-ataaatactaatttgatattt---ctactttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTAT
|||||| |||||  || |  ||  |   |||  ||| ||| |||  || ||| | |||||  ||  |||| |||   |  |||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||
gtaatgaatttaatttccatatatgatctagcagtgcagagttatgtgattggaaaaataaaaacctgatttttacccacctttgagcagAATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTAT

upper sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------------------------------------------------------------------gtaatgcatttagctttctaatcaggcttagtgg-tgtagatttaatgcttga-taaatactaatttgatatttctact-ttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTAT
                                                                                        |  || ||||        |     ||||| ||  || | ||| ||    ||  || ||  |  ||   ||||| ||    | | ||||| | ||||||||||| |||||  ||||||| ||||| ||||| |||||  ||||||  ||||||||||| |||||||||
gtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagacagattagcttattgactgcatattcaagatctgtctagatcgtttttaactatttgtatgacttaacagAACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278210|gb|FL461478.1|FL461478
EST:     TGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCG                         AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATC
genomic: TGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCGgtaatgcatt ... ctttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtgtagatttaatgcttgataaatactaatttgatatttctactttgagcagAATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTAT
                                       tttctacttt  CT-rich tract
                     ataaatactaatttga  TA-rich tract