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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taattattagcagtggaaatttgtatctatcatcatctaaaaaagggtaattttagttgtttcagtgttctgacagcaatcctatctccttccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGCAGAACAACATCGACCTTGTATTGACTGAGGTTTTCATGCCTTGTCTATC

Basic information

species Zea mays
transcript GRMZM2G095727_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095727_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g17570.1 (Oryza sativa), 3'ss of exon 4
----------taattattagcagtggaaatttgtatctatcatcatctaaaaaagggtaattttagttgtttcagtgttctgacagcaatcctatctccttccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGCAGAACAACATCGACCTTGTATTGACTGAGGTTTTCATGCCTTGTCTATC
          |   | |||||| || |  |||  |||||  |  || |     |       ||  |||  || | || | || || | |   |||||| ||| ||| ||||||| ||||||||||||||  | |||||||||| || ||||||||||||||| ||| |||| |||||||||||||| |||||  | |||||  |||| ||
tgcatgcttgtttctcttagcactgaaggttt--atctaaaactatgttttgca-------ttatgttagtttattgatttggcatctactgtatctctttc-attctagTTATCCCTGCTGAAAATGGGCTACATGCATGGCAATGTCTTGAAGATCTGCAAAACCACATTGACCTTGTATTGACCGAGGTCGTAATGCCACGTCTGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028242|gb|CO456991.1|CO456991
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCG
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCG
EST: gi|31664321|gb|CD573046.1|CD573046
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
EST: gi|32841169|gb|CD980850.1|CD980850
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
EST: gi|32840867|gb|CD980548.1|CD980548
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
EST: gi|78086698|gb|DV515091.1|DV515091
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
EST: gi|67021300|gb|CO450049.1|CO450049
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGC
EST: gi|71432179|gb|DR813229.1|DR813229
EST:     CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAG                         TTATTCCTGCTGAAAATGGTTTGCATGCATG
genomic: CTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctg ... tccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaattttagttgtttcagtgttctgacagcaatcctatctccttccattttagTTATTCCTGCTGAAAATGGTTTGCATGCATGGCGATATCTTGAAGATCTGCAGAACAACATCGACCTTGTATTGACTGAGGTTTTCATGCCTTGTCTATC
                      ttctgac  putative branch site (score: 2)
                                  tcctatctccttccat  putative PPT
     ttttagtt  TA-rich tract