1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actttgtttcatatggcaaacaataaatgtgttatttagctagcttctacatgtgtttgtgagatagcaagcaacatgtaactccctacatttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG
species | Zea mays |
transcript | GRMZM2G095323_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCAAAA-GTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTT GEST: gi|78115630|gb|DV534018.1|DV534018
genomic: ACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTgtgaggttct ... tttacgacag-
EST: ACCAAAA-GTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTT GEST: gi|78115630|gb|DV534018.1|DV534018
genomic: ACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTgtgaggttct ... tttacgacag-
EST: ACCAAAA-GTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTT GEST: gi|78115630|gb|DV534018.1|DV534018
genomic: ACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTgtgaggttct ... tttacgacag-
EST: ACCAAAA-GTAAATGCAATGCAGCTGCAGCTACCAGGAATCGTCATCTTT G
genomic: ACCAAAAAGTAAATGCAATGCAGCTGCAGCTACAAGGAATCGTCATCTTTgtgaggttct ... tttacgacag-
tctacatgtgtttgtgagatagcaagcaacatgtaactccctacatttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG
atgtaac putative branch site (score: 2)
tacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttgtttcatatggcaaacaataaatgtgttatttagctagcttctacatgtgtttgtgagatagcaagcaacatgtaactccctacatttacgacagAGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - tgtttca
- - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtaa