1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtcaaagtaacttaatgcacatcgtcaatctcctttttctgaaatggttgtatattttgtgaagtttttttaaccctcatttctgattgcccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGTTCAAAGGATGGCCAG
species | Zea mays |
transcript | GRMZM2G094614_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAATGTEST: gi|33100148|gb|CF060108.1|CF060108
genomic: GTACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAATGTEST: gi|32833425|gb|CD973103.1|CD973103
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTC-ATGGEST: gi|32845936|gb|CD985617.1|CD985617
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAATGTEST: gi|33100339|gb|CF060299.1|CF060299
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAATGTEST: gi|33100364|gb|CF060324.1|CF060324
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAATGTEST: gi|32833227|gb|CD972905.1|CD972905
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGT
EST: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACEST: gi|166427526|gb|EG313656.1|EG313656
genomic: ACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGAC
EST: AATGAGATGTACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCG CTCATTATTGCTTGCAGCAAGGGAGGAAAACACTATAGTTGACCTCAAT
genomic: AATGAGATGTACTTTGCCATCACCCTTGATAGGAAAACTGCTGGTCCGgtatgccatt ... cccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAAT
tggttgtatattttgtgaagtttttttaaccctcatttctgattgcccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGTTCAAAGGATGGCCAG
cccatttc CT-rich tract
tatattttgtgaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcaaagtaacttaatgcacatcgtcaatctcctttttctgaaatggttgtatattttgtgaagtttttttaaccctcatttctgattgcccatttcagCTCATTATTGCTTGCAGCAGGGGAGGAAAACACTATAGTTGACCTCAATGTTCAAAGGATGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -caaagtaa
- - - - - - - aatgcac
- - - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - atggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg