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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 6
gtaagtaatttct-ggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgat-tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
||||||  || ||   |||  |    ||||| |  || | |||| |||||||||||| | |              ||||   |||  || |  |   | ||||   ||   ||  |  | | | | | |||  ||||  || ||| |||  | |||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||
gtaagtttttgctcaattcaggtgcactgctatggaa-attcatagttaagtgcatgttct--------------tttatcagtac-ggatggt--ggctaaacttatatttctcttctgataatat-taataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA-
                                                                          | || |  |  |  |     |   | |||      ||   |||||   |||| ||||||| | | |||    |  | |||||||||| || ||||| ||||||||||||||||||||||||||||| || || || ||||| |||||||||||||||||||| |||||| | || ||||| 
--------------------------------------------------------------------------tatataatttcttctggggaggtctgaatatgcatgtttttctttgcctttt-taaatattttccctg----taattcaggAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAG

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                             ||    |      |||  | || ||    |||||   ||  |  ||| ||  || ||||     |      || |  ||  | | ||   |||||||||| || || || |||||| ||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||| |||||| | || |||||
-------------------------------------------------------------gtatttaacttcctttgca-gtgttctacaattg---tatgttgatgtgtgaatttttacccccta-----atatcttcccaatatgt--cagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGACTGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                                        || | | |  | ||  |     |   | |||   |  ||  ||||||   |||| | ||||| | | |      |  | |||||||||| || ||||| ||||||||||||||||| ||||||||||| || || |||||||| |||||||||||||||||||| |||||| | || |||||
------------------------------------------------------------------------gtataaaatttcttc-tggggaggtatgaatatgtatgtttatctttgcctttt-ttaatatatccccca----taattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 7
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatg-tactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                                       |  |||| |    || |   | ||   || |    |  ||  || | | | |||| |     |  ||   |     |  | |||||||||| || || || ||||||||||||||||| ||||||||||| || || || ||||| || ||||||||||||||||| |||||| | || |||||
-----------------------------------------------------------------------gtatttaaattcctttgc--agtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattt-----tgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                                           | ||  |  || |    |||    | |   |  |   |||  | |||        | ||| | |  ||| |  |||  || ||||||||||||| || |||||||||||||||||||| || |||||||| || || || ||||||||||||||||||||||| || || ||  | ||||| ||
--------------------------------------------------------------------------gtgagctgctttagcctcttgtcacataattactatctcataataaaacacacagatataattctagacttttgttt--ctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                             | |||  |   |  | |     |||| |    |||    ||  ||  | ||  | |||||||| | |   |   ||     |||||  |  ||||||||| || ||||||||||| |||||||| || || |||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||| ||
-----------------------------------------------------------gtgagcattgactgcctcaagtcaattg-tactctgaagagaaggaaaaaatctgt-tttaaattgtttcggtcgata-----atttt--tatagGAAGTTCAATCAACCCCAGTGAAAGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactc-tgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                                  ||| |  |   ||    |||  |  |||||| |   | ||  | |   || ||   | ||  |||| |  | || | || ||| |  ||||||||| || ||||||||||| ||||||||||| || |||||||| || || || ||||| ||||| ||||||||||||||||||||||||||||| ||
----------------------------------------------------------------gtgagcaactaagaggacaattattccattgagatctctgaagcaatgtttcatttgttcttaaaaatgtcaattccttatattgat--agGAAGTTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGTCATGAATTCCATTGCTCGTGGACAGAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                 ||   |  ||    | |||  | | ||||     |   | ||   ||    | |  |||     ||||  | || |  ||||  | | |  ||  |||     |||||||||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| || || |||||||||||||| ||||||||||| || |||||
-------------------------------------------------gtcagtaatgctaggaagataatgatttattaccaaaagctagg-gaaaagattttatg---ttatctggatatataataaac-tcttccttgtcttt--catagGAAGTTCTATCAACCCCAGTGAGAGAACCTATCCTGAAGAGATGATACAAACAGGGATTTCTACTATTGATGTCATGAACTCCATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaat---tgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                 |||  |  | | |      |||   ||||  | |      | |    |||  |  |    | |   ||     | ||  ||||    | | || |  ||||  | |||| ||||| || || || ||||||||||| ||||| || ||||||||||| || ||||| || || ||||||||||||||||| |||||  | ||||| ||
-------------------------------------------------gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttcctttt--ttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                               | |  | | |  | ||  || ||   | |  |    |   || |  | |  | ||||   |||  ||     | ||||    ||   || |||   |||| |       |||| | ||| ||||   ||| || ||||| |||||| | || || || ||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| || |||||
------------------------------gtgct-tgcactcgctttggtacaccttataatcggtaactggctgcaaa-attttggaatattttgt----gctatga----attgctatattcgttaaacagtctacttgatgtggcttcagGTGCTTCAATCAACCCTAGTGAGCGGACATACCCTGAGGAGATGATTCAAACTGGAATATCTACCATTGATGTCATGAACTCTATTGCTCGAGGTCAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 5
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                                 ||||   || | |      ||   ||  |      |  |    |||   ||  |     ||         | ||||  | | ||   | | |||  |  |  ||||   ||| || || || |||||  | || ||||| ||||||||||| || || || ||||| || |||||||||||||| ||||| ||| | ||||||||
-------------------------------------------------gtgcggtcttttgctt---gtcttttccactaacctcagcatcttggaatattttttaaagattgaag--agatttgcttattagtcaatttgacatgacctcagGTGCTTCGATCAATCCAAGTGAACGGACGTATCCTGAGGAGATGATTCAGACAGGAATATCTACGATTGATGTCATGAACTCCATCGCTAGAGGACAAAA

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                          |  ||      |  ||  |   ||   ||    |||| || |  || |  | ||      ||    | |       ||||| |  | |||||    |  ||| |     ||||    || || || || |||||| | || || |||||||||||||| ||||| || ||||| || |||||||||||||| || |||||||| || |||||
-----------------------------------------gtacttccccttacactacc-cacattctactcattagccgca--ggctcttggaacc--ttcggaaaattttgaagtaaatatgtttaatattatattcgatctgatcacagGTGCATCGATCAATCCTAGTGAGCGGACGTACCCAGAGGAGATGATTCAAACAGGAATATCTACGATTGATGTCATGAACTCTATTGCTCGAGGGCAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32829975|gb|CD969653.1|CD969653
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32831681|gb|CD971359.1|CD971359
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32910787|gb|CF015599.1|CF015599
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33101985|gb|CF061945.1|CF061945
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32928560|gb|CF033372.1|CF033372
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32929168|gb|CF033980.1|CF033980
EST:     TATTGACAATGGCCCNCCGATATCGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31351754|gb|CD436111.1|CD436111
EST:     TATTGACACTGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33094782|gb|CF054776.1|CF054776
EST:     TATTGACAATGG-CCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33102163|gb|CF062123.1|CF062123
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTTTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32838409|gb|CD978087.1|CD978087
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32850751|gb|CD990432.1|CD990432
EST:     TATTGACAATGGCCCCNCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGACGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|194716810|gb|FK933969.1|FK933969
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32850726|gb|CD990407.1|CD990407
EST:     GATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGACGATCCAAA
genomic: GATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|13490658|gb|BG517422.1|BG517422
EST:     TATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33101471|gb|CF061431.1|CF061431
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTTTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33102084|gb|CF062044.1|CF062044
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211474175|gb|FL062083.1|FL062083
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32831612|gb|CD971290.1|CD971290
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33102277|gb|CF062237.1|CF062237
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA
                                      ctctgat  putative branch site (score: 4)
                                            ttttgct  CT-rich tract
              atctttaaattttgta  TA-rich tract