Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT

Basic information

species Zea mays
transcript GRMZM2G094051_T05
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
gtttgtaaacttggaactctacatctggttcctgtgttctgtttata-tatgacaatttacatgatgatctccaccttttggtgttc-tatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
          |||  ||  |  ||||   |    ||||||| || || | || |||||     | |    | ||  | ||||||||  |||||||| ||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
--------gtttgccaccttgaatctcact----tgttctgcttttactgtgtcaatt-----ggtaccttacag-tcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 6
--gtttgtaaacttggaactctacatc-tggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
   | | |   |||| |    | |||  || |   | | | |  |||| |  | |  |  | | |  |  |  ||   | |||||   | || |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
gtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttacagctaatcaaattcttatt--tggcctattgttggtcaaccattagGGCTTGGGGAAGCATGACATCATCTGCATTGAGGATCTTGTCCACGAGATCATGACTGTCGGTCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCCT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G06860.1 (Glycine max), 3'ss of exon 6
----gtttg-taaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
    || || |  ||  |  | ||  | |    |  ||   |  || || | | |   | |   ||   |  || |   | |    |    |  |||   ||||| |||||    ||||| ||| |||| |||||  | || |||||  |||||||||| || || ||||||||||||||||| || |||||||| |
gtctgtctggtgtaccggctagtcatctttaaatatctccat--tgcttgtttgttctattactcagttttttcgctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCATTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 6
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
             | | | |  || |      | |    |    || |     ||||  |   ||| |    || |  | |  |     ||||   |||||||| |    ||||| | || ||| |||||  | || |||||||| |||||||| || ||||| |||||||| ||||||||||| |||||||
-------------gtattgtttattttacaattcttccttacagattttaattaattcgctacatgcttcttacttgcttggat---gacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
gtttgtaaacttggaactctacatctggttcctgtgttctgtt-tatatatgacaatttacatgatgatctccaccttt-tggtgttctat--cagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
||  ||    |     || ||   ||   |      |||  ||   | | ||     |||| |  |  | | | |     |    ||| ||  |||   ||||| |||||    ||||| ||| |||| |||||  | || ||||||||||||||||| || |||||||||||||||||||| || |||||||| |
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 6
gtttgtaaacttggaactctacatctg-gttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
             | | | |  || |    | |||| ||     | |  ||   |||| ||   ||| |    || |  | |  |     ||||   |||||||  |    ||||| | || ||| |||||  | || |||||||| |||||||| || ||||| |||||||| ||||||||||| |||||||
-------------gtattgttaatttacaattctgtattacaaatttgaat--taattcactacatgcttctgacttgcttggat---gacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------------------------------gtttgtaaacttggaactctac--atctggttcctgtgttctgt---ttatatatgacaatttacatgatg---atctccac----cttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
                                                                                                 |  | ||  | | | || |    |||      | ||   |||   ||||     | | | ||  |  |    || |  ||    | |||| ||||  |||||||  | || |||||   |||||||||| ||||||||||  | || ||||||||||| ||||| ||||| |||||||| ||||| |||||  |||||||||
gtgcatatcatcaacctatctccttcatcaagtctggttcagttcctaaagtcaatattattgccgttatccctgtcctagaaaaaatgatgtattatcatcaatgttggattcaatttgtctaacagatatggattgtcatttatcatcaaaactctatgtcttctctatatttacatatcctttgctgttgaatcagGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
|||| ||    ||  | |||  |||| |     || |||| |      ||       || ||  || |    ||||  |  |||  |   |||  ||||| |||      || || ||||| || |||||| |||| ||||||||||||||||| || || || |||||||||||||||||||| |||||||
gttttta----tgtcattctgtatcttg-----gttttctatgagcg-attgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
|||| ||    ||  | |||  |||| |     || |||| |       ||     ||  ||  || |    ||||  |  |||  |   |||  ||||| |||      || || ||||| || |||||| |||| ||||||||||||||||| || || || |||||||||||||||||||| |||||||
gttttta----tgtcattctgtatcttg-----gttttctatgagcgattgtttgctt-tatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtaaacttggaactctacatctggttcctgtgttctgttt-atatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
                 | ||  ||  ||  ||  ||| | ||| |   ||       || ||  || |    ||||  |  |||  |   |||  ||||| |||      || || ||||| || |||||| |||| || |||||||||||||| || || || |||||||||||||||||||| || ||||
--------------gtttttatgtcctgtatcttggttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGGATTATTTGCATGGAAGATCTTATTCATGAAATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGACCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 6
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctat--cagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
||||||     || |  | || ||    ||  | |||||  | |||   |   || |  | |    ||    || ||||||| |  |||  ||||  |||||||||      ||||| |||||||| |||||  | || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
gtttgt-----tgtaggt-taaataacatttatatgttcgatgtattgctataaactggcttttcaatg---acattttggtatgttattgcagGCTTTGGGCAAGTTTGGAATCATTTGCATTGAAGATCTCATCCATGAGATTATGACTGTTGGGCCACACTTCAAGGAGGCAAACAACTTCCTGTGGCCAT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: PP1S2_667V6.2 (Physcomitrella patens), 3'ss of exon 4
--gtttgtaaacttggaactctaca----tctggttcctgtgttctg---tttatatatgacaat----ttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
  || |  | |  || |   | |||    |    ||  |  |  |||   | |||   |  || |    | || ||||||  ||      ||| | || | |  |  |||||  |||      ||||| || |||||||||||  |||| |||||| | |||||||| || ||||||||||| |||||||||||  | ||| | |
tcgtataaatagctgcattgcgacacaattaaaattagtaggacctgacgtgtatcctttgcagtgatttcacctgatgaattctg----ttgattttgtgtagGCACTTGGA-AAGTTGGGTATCATATGTATTGAGGATCTCATTCATGAGATCTTCACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTTTTATGGTCTT

upper sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttaca-tgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
                                 ||    |  || | || ||  | ||  | |  | |||    | | || ||  | | |||| || |||| ||| |    |||||||| || ||||||||  | |||||||||   || ||||| ||||||||||||||||| || |||||| ||||||| |
---------------------------------gtacgatccttttctacgatgacttctagttctcatcgtttcttatttgttctttctcagAGCCTGGGGAAGTATGGAATCATCTGTATCGAGGATCTCATCCACGAGATCTACACGGTTGGGCCACACTTCAAGGAGGCGAATAACTTCTTGTGGCCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18178123|gb|BM379333.1|BM379333
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|211044671|gb|FL025842.1|FL025842
EST:     AGCTGCATAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACACCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|71425539|gb|DR806740.1|DR806740
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|101401380|gb|EB822367.1|EB822367
EST:     AGCTGAACAAGCAGAGGATTCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGGTTGGGCAAGCACAACATCATCTCCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|211041713|gb|FL025836.1|FL025836
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|94472207|gb|EB701165.1|EB701165
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|32849509|gb|CD989190.1|CD989190
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|28873719|gb|CB329668.1|CB329668
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|211041715|gb|FL025838.1|FL025838
EST:     GCTG-CCTTAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: GCTGAAC-AAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|60349517|gb|DN216490.1|DN216490
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|60399095|gb|DN231909.1|DN231909
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|211041716|gb|FL025839.1|FL025839
EST:     ATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|33090919|gb|CF050913.1|CF050913
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|67013052|gb|CO441801.1|CO441801
EST:     AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCGCGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|15632506|gb|BI679599.1|BI679599
EST:     CCCTCTATCAAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: CCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|76281807|gb|DV021375.1|DV021375
EST:     AGCTGAACAAGCAGAGGTTCCCTCTGTCCAACAACCAAGTCATCGAGGAG                         GGGTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: AGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
EST: gi|6448416|gb|AW181182.1|AW181182
EST:     CAAGCAGAGGATCCCTCTATCAAACAACCAAGTCATCGAGGAG                         GGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC
genomic: CAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaac ... gttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT
                                              ttctatc  CT-rich tract
     ttatatatgacaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG