Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

Basic information

species Zea mays
transcript GRMZM2G093902_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtttggtgcttggtatc-agatgttatcttattatgcaaacatataac-aaaatagctgttagtaatactct----agttg--acttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
||||| | | |   ||| |   |||    ||  |||      | |       |||||| | | |  |  |||    || ||   ||||  ||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||| ||||  |  |||||||| ||| | ||||| || || |  |
gtttg-tacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagct-tgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA16G33240.1 (Glycine max), 3'ss of exon 5
----------------------------------------gtttggtgcttggtatcagatgttatc---------ttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                         ||| |  || ||  |   ||||| |          |  || | ||   ||  |      ||  || || |      ||   || |||   |  ||||||| |||||||||||||||||||| ||||| || |||||||| || || || || || || |  |  ||  | |||||| | || || || |||   |
gtttgattttttattcttcatagttaactgatggaatttcttttagcactaggattttcatgttgttggctcattttctttcttcatggattgatggtgctaaatgctaattgattccttactgtcttatatatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACCC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
-------------------------------------gtttggtgcttggtatcagatg---ttatcttattatgcaaacatataacaaaatagct-gttagtaatactc-tagttgacttggctt-cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                      || |   || ||  |   |||   ||  || ||| |  |    |||  ||| || |   ||| ||  || ||    ||  | || ||| |||||||| |||||||||||||||||||| ||||| || |||||||| || || || || || || |  |  ||  | |||||| | || ||||| |||   |
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatttggctcattttctatttttatttcaacatggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 5
----------------------------------------------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaata--gctgttagt------aatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                               ||  |  || ||  |   ||||| |    | ||         |||   | |   | || ||        || | | |  || | |   ||  ||||||| |||||||||||||||||||| ||||| || |||||||| || || || || || || |  |  ||  | |||||| | || || || |||   |
gtttgttttttttttttttttctacatagccacctgattgattttctttcagcactaggattttcatgttgttggctcattttttttcttaatggattgatgttgctaaatgcaaaaagatttttcttcattgtcctatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACTC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgtta-gtaat---actctagttgacttggctt-cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
  |  || |||   |   ||       || ||     |   | || | |   || | ||  ||||    | ||| ||| |       | ||||||||||||||| ||||||| ||||| ||||| |||||||| || |||||||| ||||| || |  |  || || |||||| | || |  || ||    |
-gtcagttcttcacagtggaaacctgtttcttgaatcacattctacctagtgagatcttgtgtaacctgaatctggttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------gtttggtgcttggtatcagatgttatctta--ttatgcaaacatataacaaaatagctgtta-------gtaatactctagttgacttggcttca----gGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                      ||| ||        |||    ||    |   | || |       || |   || ||  ||         | ||  ||| | |  |||| | |||    |||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| || |  | |||| | |||||| | || || || |||   |
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
----------------------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttag-taatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                      |||| |       | | || ||  |  |  | ||   | ||| | |     |   |    | | ||  ||   ||   | |  |  |||| || |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| || || || |  || || |||||| |||| || ||||||   |
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtttggtgcttggtatcagatgttatcttattatgcaaac-atataacaaaatagctgttagtaatactctagttgacttggctt---cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
           |  |||| | |  || | | | | || | | | |   |    | ||  |         ||  | |   | | ||  ||||   |    ||||||||  | ||||||||||| ||||| ||||| ||||||||||| ||||||||||| || || |  |  ||| |||||||| | || || || |||   |
aatctcctattgcatggttcct--tacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------------------------------------gtttggtgcttggtatcagat---gttatcttattatgcaaaca-tataacaaaatagctgttagtaat---actctagttgact--tggcttc-agGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                                        ||       | |||||| ||   ||||||| |  ||      | |      |  | || |||   ||    | || |    | |  || |||| |||| ||  | ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || |  |  ||  | || ||| |||| || || ||  |||
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------gtttggtgcttggtatca-gatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                                         |  |||  ||| | ||| ||    ||||  || |||||         ||  || |  |||| |||  | | |||   ||   ||||||||||  | |||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |  |  ||| | || ||| |||| || || ||  |||
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtt-tgcaagttgtctgtaatgtatc--ttagaaatg-tttcgttatttt--tttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaata---ctctagtt---gacttggctt----cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                      |||   ||  |    |||  | || |  | | || |  |    |     | ||| | ||    |     |||  |||   ||  |   ||    ||||| ||| | || ||||||||||| || ||||| |||||||| || |||||||||||||| || |  |  ||  | || ||| ||||||| || ||  |||
gtattcttgacagctttttaatcttgttagtctcaaccgttcactgagtttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcagGGAGTGTTGGGCATCAAGGTTAAAATCATGCTTGACTGGGACCCGAAGGGCAAGCAAGGACCTATGACTCCCCTTCCAGATGTGGTTACCATCCATATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------------------------gtttggtgcttggtatcagat---gttatcttattatgcaaacat-ataacaaaatagctgttagtaatactctagttga-------cttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                                                ||||    | | | || | |     |  |  ||| ||  |    | || |     | |    || | |  |   | ||||       | |   | ||||| ||| | ||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| || |  |  ||  | || ||| ||||||| || ||| |||
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactga-gcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------gtttggtgc-ttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttc-----agGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                                     |  | |  |  ||  |  | | || || |||     ||||        | ||   |  |  |      ||||| |||   | |     |||| ||  | ||||||||||| ||||||||||| |||||||| || |||| |||||||||  |    |  |   | || ||| |||| || |||||| |||
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacagaaatatgagacttgtcagttgtcttccttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggctt--cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                                             | |||| | | ||        | ||  | |  | || ||   ||   ||       || |   | |   | |||   |||  ||||| ||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| || |  |  ||| | || ||| ||||||| || ||  |||
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgtt--------agtaatactctagt------------tgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
           | ||| ||   |  |  || |  | | |  |  |  ||| ||||      ||||  | |        ||| |  ||  |||            ||   ||  | ||||| ||||| || || ||||| ||||| ||||| ||||||||||||||||| |||||||| || |  |  ||  | || ||| | || || |||||| |||
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtttggtgcttggtatcagatgttatcttattatgcaaacatat-aacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                         |   |  |  | | | | |  |        | |||  |||   |    |||   |||   ||||| ||  | || |||||||| ||||| |||||||||||||||||||||||||||   |||||  | |  ||  | || ||  |||| || || || || |
------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagcattggattgtgctgg---cagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggctt-cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
            |||  |||    |    || ||    |  |  | | |       |||  |||   |    |||   |||||  ||||| ||  | || |||||||| ||||| |||||||||||||||||||||||||||   |||||  | |  ||  | || ||  |||| || || || || |
------------gtacaaga----actcgatcattttgatttggatcca-------gtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtttggtgcttggtatcagatgttatcttattatgcaaacatat-aacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
                         |   |  |  | | | | |  |        | |||  |||   |    |||   |||   ||||| ||  | || |||||||| ||||| |||||||||||||||||||||||||||   |||||  | |  ||  | || ||  |||| || || || || |
------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagcattggattgttctgg---cagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342788|gb|DN209761.1|DN209761
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|74235988|gb|DT643902.1|DT643902
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|74240382|gb|DT648296.1|DT648296
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|148973769|gb|EE024903.2|EE024903
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCCAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|16917288|gb|BM073218.1|BM073218
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|4646893|gb|AI621968.1|AI621968
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|50328603|gb|CO523729.1|CO523729
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|60347103|gb|DN214076.1|DN214076
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|76013473|gb|DT940643.1|DT940643
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|211411261|gb|FK965129.1|FK965129
EST:     CTGTCAACCTATACATTGATTCACCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGGTTTCAAGGGTAAGATTATGCTGGGACTGGGATCC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGG-TATCAAGGTTAAGATTATGCTGG-ACTGGGATCC
EST: gi|4647182|gb|AI622257.1|AI622257
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|60397108|gb|DN229927.1|DN229927
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|88757758|gb|DY541899.1|DY541899
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|12971830|gb|BG267679.1|BG267679
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGGCAG                         GGTGTGCTTGGTAT
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTAT
EST: gi|78109693|gb|DV528109.1|DV528109
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|60398401|gb|DN231217.1|DN231217
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|50339749|gb|CO534875.1|CO534875
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGAT
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGAT
EST: gi|74244112|gb|DT652026.1|DT652026
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
EST: gi|78024902|gb|DV493289.1|DV493289
EST:     CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAG                         GGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC
genomic: CTGTCAACCTATACATTGATTCAGCTGTGAGACATGTTCTATTGAGACAGgtttggtgct ... ttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC
     aacatataacaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG