1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggcacgcagtaggctcttgtgacgcagagttcatggcatgctggcgcattgtgcttaattgatctgtttttttttttttacttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGGACCAGGCGATGCATGCTAGG
species | Zea mays |
transcript | GRMZM2G093858_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGEST: gi|149073410|gb|EE161714.2|EE161714
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGEST: gi|148930222|gb|EC872656.2|EC872656
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGEST: gi|148997914|gb|EE035902.2|EE035902
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
EST: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGG GCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
genomic: TAAGCATCGCTCTGGATGTCGCTCGGGGTCTGGAGTACCTGCACGACGGGgtaggcacgc ... ttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTG
catgctggcgcattgtgcttaattgatctgtttttttttttttacttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGGACCAGGCGATGCATGCTAGG
tacttac putative branch site (score: 1)
tctgtttttttttttt CT-rich tract
ttaattgatctgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacgcagtaggctcttgtgacgcagagttcatggcatgctggcgcattgtgcttaattgatctgtttttttttttttacttacacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGGACCAGGCGATGCATGCTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA