1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaatttacatgtgttctgagtcagataagttttcaagacatgatgtgcattattataaactaatataaatattctgttcgttttttgccgtgtctgcagGGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCATGACTTCGAAGAGATGGACATAAGTCAAGTTTGATCAACATGTTCTAACACTAGTTTA
species | Zea mays |
transcript | GRMZM2G093391_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCAG GGAGAATCACAACACAAACAGTATCTGTACCAAGGACGTCCATGACTTCGAEST: gi|56382640|gb|CV985309.1|CV985309
genomic: AACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCAGgtaagctaaa ... gtgtctgcagGGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCATGACTTCGA
EST: AACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTACATCCCCAG GGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCA-GTACTTCG
genomic: AACTTCCTTGTGGCCTAAACTAAGAGATCCTCCAGCCCTTAGATCCCCAGgtaagctaaa ... gtgtctgcagGGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCATG-ACTTCG
gtgcattattataaactaatataaatattctgttcgttttttgccgtgtctgcagGGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCATGACTTCGAAGAGATGGACATAAGTCAAGTTTGATCAACATGTTCTAACACTAGTTTA
aactaat putative branch site (score: 3)
ttattataaactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatttacatgtgttctgagtcagataagttttcaagacatgatgtgcattattataaactaatataaatattctgttcgttttttgccgtgtctgcagGGAGAATCACAACACAAACAATATCTGTACCAAGGACGTCCATGACTTCGAAGAGATGGACATAAGTCAAGTTTGATCAACATGTTCTAACACTAGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -ttacatg
- - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa