Sequence
atgc intronic sequence ATGC exonic sequencegtagctaactgatctccatcaccatggaattcaatactagaaaaactttgctgacctttttattttctgcgtttgttctggtttactggactctctatgtttatgtgtacacaccatttctgacttgcagGTTTTATTGTTTATTCATGCGTGGCAGTGGCCTGCGTTCTTTTTTTGATATTTCGGGTTGTTGAGCGCTCTGGGCACAGATTGATGCTTGTTTACATAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092991_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g29510.4 (Oryza sativa), 3'ss of exon 5
gtagctaactgatctccatcaccatggaattcaatactagaaaaactttgctgacctttttattttctgcgtttgttctggtttactggactctctatgtttatgtgtacacaccatttctgacttgcagGTTTTATTGTTTATTCATGCGTGGCAGTGGCCTGCGTTCTTTTTTTGATATTTCGGGTTGTTGAGCGCTCTGGGCACAGATTGATGCTTGTTTACATAGC
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------------------ttctcttgcgagcatttactt-----attctctcacttgttctaagaatggaacttcttatagaatgttaa--ccacaaggttttgttatctggataacttctg-----cagGTTTTATTGTTTATTCATGTGTGGCTGTGGTGTCTGTTCTATTTTTGATTTTCTGGGTTGCTGAACGTTCTGGACACAGGAAGATGCTTGTTTATATTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76284893|gb|DV024461.1|DV024461EST: GAGAAAAATTGATTCTATGAAGGAAATATGGCATCTTGCAACACAGCCAG GTTTTATTGTTTATTCATGCGTGGCAGTGGCCTGCGTTCNNNNNNNGATAT
genomic: GAGAAAAATTGATTCTATGAAGGAAATATGGCATCTTGCAACACAGCCAGgtagctaact ... tgacttgcagGTTTTATTGTTTATTCATGCGTGGCAGTGGCCTGCGTTCTTTTTTTGATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctggtttactggactctctatgtttatgtgtacacaccatttctgacttgcagGTTTTATTGTTTATTCATGCGTGGCAGTGGCCTGCGTTCTTTTTTTGATATTTCGGGTTGTTGAGCGCTCTGGGCACAGATTGATGCTTGTTTACATAGC
ttctgac putative branch site (score: 2)
ccatttct CT-rich tract
tatgtttat TA-rich tract