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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgcttcgatgcatgttgtgaacctatttccctgagatccacttttgttttgggtctgcgtctaccatgttttatgaagttctaatttggggtgtacattactgtactttgttctattcttagtcaaatgacatcttgttatttttcatgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT

Basic information

species Zea mays
transcript GRMZM2G092975_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50328691|gb|CO523817.1|CO523817
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTTTTCGAAACTGTATCCCAAGCTTTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|37377268|gb|CF625223.1|CF625223
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|37378530|gb|CF625957.1|CF625957
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|4887391|gb|AI677490.1|AI677490
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|211071940|gb|FL305347.1|FL305347
EST:     ATCAGAATCTTTGTATGGTGCNTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: ATCAGAATCTTTGTATGGTGC-TTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|211071943|gb|FL305350.1|FL305350
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|18964243|gb|BM660894.1|BM660894
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|113703164|gb|EE680668.1|EE680668
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|50328692|gb|CO523818.1|CO523818
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|71329112|gb|DR801265.1|DR801265
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|67017133|gb|CO445882.1|CO445882
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|211441232|gb|FL038101.1|FL038101
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|148965852|gb|EE016749.2|EE016749
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|78180178|gb|DV550551.1|DV550551
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|148965851|gb|EE016748.2|EE016748
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTTTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|32941156|gb|CF045975.1|CF045975
EST:     ACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACT-TATCCCAAGCTCTGAATTCATCAATA
genomic: ACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|71329114|gb|DR801266.1|DR801266
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|71759696|gb|DR957633.1|DR957633
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTTTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|6827536|gb|AW331179.1|AW331179
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAAT
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAAT
EST: gi|4573353|gb|AI586912.1|AI586912
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGTAATTCATCAAT
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTG-AATTCATCAAT
EST: gi|113701140|gb|EE678644.1|EE678644
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|67016388|gb|CO445137.1|CO445137
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|67022320|gb|CO451069.1|CO451069
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|67041562|gb|CO467817.1|CO467817
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|5932630|gb|AW056991.1|AW056991
EST:     CTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|91877573|gb|EB407530.1|EB407530
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|50323661|gb|CO518787.1|CO518787
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|67028880|gb|CO457629.1|CO457629
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|37380700|gb|CF627177.1|CF627177
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|71438822|gb|DR819872.1|DR819872
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|76909375|gb|DV163351.1|DV163351
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|71303012|gb|DR787617.1|DR787617
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|148973855|gb|EE024997.2|EE024997
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|37393439|gb|CF633984.1|CF633984
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|40336492|gb|CK370562.1|CK370562
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|32848601|gb|CD988282.1|CD988282
EST:     ACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: ACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|78107042|gb|DV525460.1|DV525460
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAGGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|148973856|gb|EE024998.2|EE024998
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|50323660|gb|CO518786.1|CO518786
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|88750610|gb|DY534751.1|DY534751
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|116823354|gb|EC866875.1|EC866875
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|37381438|gb|CF627606.1|CF627606
EST:     CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
EST: gi|166601868|gb|EG132305.1|EG132305
EST:     CTTGTGAGTCCATGTACAAGCCGAACATG                         GAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA
genomic: CTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 384

GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 331

GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 403

GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 327

GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgctt ... catgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtactttgttctattcttagtcaaatgacatcttgttatttttcatgacatagGAACCTGATGAACTCTTCGAAACTGTATCCCAAGCTCTGAATTCATCAATAGACCGTGACTGCCTTAGTGGGTGGGGTGGCTATGTTCTGATTGT
                                tcttgttatttttc  CT-rich tract
                               atcttgttattttt  TA-rich tract