1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatcccctccaacccctgaggggatttgtgttcccaaactagcccttaagataggtcaagtggagttgctgctttactagtatacatgtttttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCAGGTCATGTCACATTGGATGGATACGAACACACAACTTATTCTCAGCGA
species | Zea mays |
transcript | GRMZM2G092959_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAG AAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCEST: gi|8665481|gb|BE186297.1|BE186297
genomic: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAGgtatcatagt ... tttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
EST: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAG AAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCEST: gi|37399356|gb|CF637005.1|CF637005
genomic: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAGgtatcatagt ... tttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
EST: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAG AAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCEST: gi|12047443|gb|BF729582.1|BF729582
genomic: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAGgtatcatagt ... tttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
EST: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAG AAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCEST: gi|60354878|gb|DN221851.1|DN221851
genomic: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAGgtatcatagt ... tttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
EST: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAG AAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
genomic: TTCCAAAGTCATGATATTTTAAGTTCAAACCCTTCGACTATGAATCAAAGgtatcatagt ... tttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCC
ttaagataggtcaagtggagttgctgctttactagtatacatgtttttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCAGGTCATGTCACATTGGATGGATACGAACACACAACTTATTCTCAGCGA
tgttttt CT-rich tract
atgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcccctccaacccctgaggggatttgtgttcccaaactagcccttaagataggtcaagtggagttgctgctttactagtatacatgtttttgcggcagAAATGGACACCTATTTCATGCATCATCTCTGGGAGAGAGTACACATACTCCAGGTCATGTCACATTGGATGGATACGAACACACAACTTATTCTCAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - ccctcca
- - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacatg