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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcactcctgccagcttctagccatggagtttttgatagaagtaatggtccttccaaaaggacaattagtcacaatctactttattgttgctatttcagGAATTCAATAAACATGACAGGGAACCATCAAAGTATGTTAAACACTGGACGGGCATCAAACCAAAAACTGGTGCGAAATACACATGTGACATTGGATACG

Basic information

species Zea mays
transcript GRMZM2G092459_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092459_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 3'ss of exon 5
gatcactcctgccagcttctagccatggagtttttgatagaagtaatggtccttccaaaagg----acaattagtcacaatcta-ctttattgttgctatttcagGAATTCAATAAACATGACAGGGAACCATCAAAGTATGTTAAACACTGGACGGGCATCAAACCAAAAACTGGTGCGAAATACACATGTGACATTGGATACG
     |  ||   | |   |  |  ||   ||| |   | ||  ||| |     | || ||     |  |  | | | ||| || ||||||||||||  ||| ||||||| ||||| |||||||| || ||    |||||  | || |||||||  ||||||||||||||||||||||| |||||||| || ||||||||||| |
-----cagctttgaaccattgactttgttatttgtacgacaaaaaatagagtccctaagagatgaaaagaaaaataataatataactttattgttgcctttttagGAATTTAATAAGCATGACAGAGAGCCCAATAAGTACATAAAGCACTGGAGTGGCATCAAACCAAAAACTGGTGCCAAATACACCTGCGACATTGGATATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtccttccaaaaggacaattagtcacaatctactttattgttgctatttcagGAATTCAATAAACATGACAGGGAACCATCAAAGTATGTTAAACACTGGACGGGCATCAAACCAAAAACTGGTGCGAAATACACATGTGACATTGGATACG
                                              ctatttc  CT-rich tract
                                 tactttatt  TA-rich tract