1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgtggagatatttgctaattattccgtaaatgtgaatgccttgagcttgtgctgtagcaggtagaataaccagtgactaaatatttatgcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAGGAATGCGAAGATGCCGAGCAACCATCGCCTAAGCAGCAGTGCTGAAGTG
species | Zea mays |
transcript | GRMZM2G091228_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCAGACTCTTATTTCAACAGACAGTTTACCTGATGATCTGAAACGAGAG ATATTGCACCTAAGGCGGCAACTGTACTATTTAAAGGCCTGTAAAGAAGAGEST: gi|40333849|gb|CK367919.1|CK367919
genomic: TTCAGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAGgtctgttgtc ... gcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAG
EST: TTCTGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAG ATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAGEST: gi|37375607|gb|CF624252.1|CF624252
genomic: TTCAGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAGgtctgttgtc ... gcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAG
EST: TTCTGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAG ATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAGEST: gi|30032156|gb|CB834007.1|CB834007
genomic: TTCAGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAGgtctgttgtc ... gcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAG
EST: TTCAGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAG ATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAG
genomic: TTCAGACTCTTATTTCAACAGACAGTCTACCTGATGATCTGAAACGAGAGgtctgttgtc ... gcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAG
agcttgtgctgtagcaggtagaataaccagtgactaaatatttatgcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAGGAATGCGAAGATGCCGAGCAACCATCGCCTAAGCAGCAGTGCTGAAGTG
gactaaa putative branch site (score: 18)
tgactaaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtggagatatttgctaattattccgtaaatgtgaatgccttgagcttgtgctgtagcaggtagaataaccagtgactaaatatttatgcgctggcagATATTGCACCTAAGGCGGCAACTCTACTATCTAAAGGCCTGTAAAGAAGAGGAATGCGAAGATGCCGAGCAACCATCGCCTAAGCAGCAGTGCTGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - gagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - gctgtag