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gtaagaaggccccctggaccctatgagcaattgtgattctggtgtgcagtttgaaatgatcttcctgacttcagctagttgtttgatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCACTTCGTCGAGAAGTGCCTAGCAACGGCATCTCAAAGACTGTCAGCAAGAG
species | Zea mays |
transcript | GRMZM2G089159_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCT GGTACTAAGCCAGAATCTCTGTACEST: gi|71445292|gb|DR826342.1|DR826342
genomic: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCTgtaagaaggc ... gatttggtagGGTACTAAGCCAGAATCTCTGTAC
EST: GTACAGCGAGTGTACACACCCTGTGCAGATCTATCA-GAAAGTGATCTCT GGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCACEST: gi|94477446|gb|EB706404.1|EB706404
genomic: GTACAGCGAGTGTACACACCCTGTGCAGATCTA-CAAGAAAGTGATCTCTgtaagaaggc ... gatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCAC
EST: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCT GGTACTAAGCCAGAATCTCTGTACCAGGTGAAAGATCCAATGGTGAGGCACEST: gi|71418334|gb|DR804408.1|DR804408
genomic: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCTgtaagaaggc ... gatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCAC
EST: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCT GGTACTAAGCCAGAATCTCTGTACTAGGTGAAAGATCCAATGGTGAGGC
genomic: CGTACAGCGAGTGTACACACCCTGTGCAGATCTACAAGAAAGTGATCTCTgtaagaaggc ... gatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGC
tggtgtgcagtttgaaatgatcttcctgacttcagctagttgtttgatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCACTTCGTCGAGAAGTGCCTAGCAACGGCATCTCAAAGACTGTCAGCAAGAG
tttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaggccccctggaccctatgagcaattgtgattctggtgtgcagtttgaaatgatcttcctgacttcagctagttgtttgatttggtagGGTACTAAGCCAGAATCTCTGTACAAGGTGAAAGATCCAATGGTGAGGCACTTCGTCGAGAAGTGCCTAGCAACGGCATCTCAAAGACTGTCAGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA