1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagcctggttgcatttccactacactcgagtgtcttctttaaaaatattcaagatttttcttttgttcgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCGAAGGAGCAATGTATCTTTTCCCTCAGATTCTTCTGCCACAGAAGGCAA
species | Zea mays |
transcript | GRMZM2G088064_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|47962226|gb|CN844935.1|CN844935
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|56538354|gb|CX054063.1|CX054063
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAGGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|67018293|gb|CO447042.1|CO447042
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|67014982|gb|CO443731.1|CO443731
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAA-GCATAGAAAGA-GGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|24769730|gb|CA404859.1|CA404859
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|6538906|gb|AW225045.1|AW225045
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|62550335|gb|DN830755.1|DN830755
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|113701726|gb|EE679230.1|EE679230
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAGGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGATGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|5456278|gb|AI833968.1|AI833968
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: CCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|44681923|gb|CK786971.1|CK786971
genomic: CCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|32856051|gb|CD995732.1|CD995732
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|58029866|gb|CX725293.1|CX725293
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|211264932|gb|FL212893.1|FL212893
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|32838607|gb|CD978285.1|CD978285
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|211267357|gb|FL212899.1|FL212899
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|31355085|gb|CD439442.1|CD439442
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|32907809|gb|CF012622.1|CF012622
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|31359639|gb|CD443996.1|CD443996
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|37381380|gb|CF627571.1|CF627571
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAGGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|67024661|gb|CO453410.1|CO453410
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCEST: gi|37384618|gb|CF629399.1|CF629399
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
EST: ACAAGGCAGAGAAGGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAG GCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
genomic: ACAAGGCAGAGAAAGATGGAATCCTTGAGTCTTTAGCTCGTCGTGCAAAGgttagcctgg ... cgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCC
cactcgagtgtcttctttaaaaatattcaagatttttcttttgttcgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCGAAGGAGCAATGTATCTTTTCCCTCAGATTCTTCTGCCACAGAAGGCAA
tttttcttttgttcgt CT-rich tract
ttctttaaaaatattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcctggttgcatttccactacactcgagtgtcttctttaaaaatattcaagatttttcttttgttcgttttacagGCGTTGGAGGATGCATTCAACAAGCTTGAGGGATTTTCATGTAACAAGGCCGAAGGAGCAATGTATCTTTTCCCTCAGATTCTTCTGCCACAGAAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA