Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattccatggaaaagcacatacttcttttttatgaatacttttacaatgtagtcatctttaattactttgttttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT

Basic information

species Zea mays
transcript GRMZM2G086904_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086904_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g38960.1 (Oryza sativa), 3'ss of exon 5
gtgagattccatggaaaagcacatacttcttttttatgaatacttttacaatgtagtcatctttaattactttgttttaaaaca--gCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAA----GACGCGGATCTACTTGGCATGGAAAGGGT
||||||||  |   |||  ||  ||  | |||  |        ||||  ||  |  | ||  |   ||||| ||| || ||| |  ||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| || | || |     |||  |   |||||    | | | ||   
gtgagatttgaataaaagacatttatgtgtttcctga------ttttgtaacctcattataatagtttactgtgtgttcaaatatagCTATGAGGACTGGGGCGTTGACGAGCTTATTGTGGAGGACTCCTGGAAACGCCAGGTTGGAGGCGGCTAAGCTGTGAC-TGAGGCTACTCAAAACGAACAG---

upper sequence: GRMZM2G086904_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G29520.1 (Glycine max), 3'ss of exon 5
---------gtgagattccatggaaaagcacatacttctttttta-----------------tgaatacttttacaatgtagtcatctttaattactttgttttaaaa-----cagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT--
           |  |||  |      || |  | ||| ||| ||                  |  |||   | |     || | |   ||||| | ||| ||  |||      |||||||||||| |||||||| || || || |||||||| |||||||||||  | || || ||||| || ||| ||    || ||    ||  |||  |||    
gtaaatacttggccattatacaagttaggaagttcttttttcttggctgggggaggttaaggttgataacatcatgccatactgactgttaatcatttttttgcaaatttctccagCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGAT--TGAACTGACAGGTGTGGGGAGGAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37388006|gb|CF631207.1|CF631207
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211479823|gb|FL079091.1|FL079091
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAG
EST: gi|89756827|gb|DY686702.1|DY686702
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211132169|gb|FL066406.1|FL066406
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211202195|gb|FL066453.1|FL066453
EST:     AGATCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGGAGTTAGACGAGCTCATTGTGGAGGACTCCT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGG-AGT-AGACGAGCTCATTGTGGAGGACTCCT
EST: gi|211500014|gb|FL079188.1|FL079188
EST:     GAGCGCGCAAGATACCCTTCACGATCAGACGGTAGCTTACCTGATGSAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTC
genomic: GAGCGCGCAAGATACCCTTCACGATCAGACGGTA-CTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTC
EST: gi|211497141|gb|FL079186.1|FL079186
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGAC
EST: gi|32834683|gb|CD974361.1|CD974361
EST:     GGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: GGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|213173412|gb|FM186750.1|FM186750
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|60355492|gb|DN222465.1|DN222465
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|6431831|gb|AW172035.1|AW172035
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211491362|gb|FL079150.1|FL079150
EST:     AGCGCGCAAAGATACCCTTCACGATTCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCA
genomic: AGCGCGCAA-GATACCCTTCACGAT-CAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCA
EST: gi|60394107|gb|DN226977.1|DN226977
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211488472|gb|FL079130.1|FL079130
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTG
EST: gi|211497133|gb|FL079178.1|FL079178
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCCATTGTGGAGGACT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTC-ATTGTGGAGGACT
EST: gi|67033929|gb|CO462678.1|CO462678
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|67023915|gb|CO452664.1|CO452664
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|213191189|gb|FM195899.1|FM195899
EST:     AGAGCGCGCAAGATACCCCTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|32931540|gb|CF036352.1|CF036352
EST:     GGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: GGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211356285|gb|FL079082.1|FL079082
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATT
EST: gi|211199643|gb|FL066449.1|FL066449
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAAAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAA-C
EST: gi|60354164|gb|DN221137.1|DN221137
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211482713|gb|FL079106.1|FL079106
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTA
EST: gi|148949027|gb|EC894449.2|EC894449
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211482719|gb|FL079112.1|FL079112
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211482707|gb|FL079100.1|FL079100
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGA
EST: gi|60355890|gb|DN222863.1|DN222863
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|18176963|gb|BM378173.1|BM378173
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211485599|gb|FL079126.1|FL079126
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACT
EST: gi|211494246|gb|FL079165.1|FL079165
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGYACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCA
EST: gi|60352015|gb|DN218988.1|DN218988
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211204767|gb|FL066468.1|FL066468
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAG
EST: gi|211485591|gb|FL079118.1|FL079118
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211482708|gb|FL079101.1|FL079101
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGA
EST: gi|211500015|gb|FL079189.1|FL079189
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211199632|gb|FL066438.1|FL066438
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211482718|gb|FL079111.1|FL079111
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211491367|gb|FL079155.1|FL079155
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|30087311|gb|CB885519.1|CB885519
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|33468145|gb|CF245194.1|CF245194
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|33467779|gb|CF244828.1|CF244828
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211479822|gb|FL079090.1|FL079090
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCA
EST: gi|32834896|gb|CD974574.1|CD974574
EST:     ACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: ACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211199642|gb|FL066448.1|FL066448
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCC
EST: gi|33098138|gb|CF058098.1|CF058098
EST:     TACTTACCTGATGGAAG                         CTATGAAGGCTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: TACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211132178|gb|FL066415.1|FL066415
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTTGACGAGCTCA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCA
EST: gi|211485597|gb|FL079124.1|FL079124
EST:     AGAGCGCGCAWGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGG
EST: gi|71317789|gb|DR795655.1|DR795655
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|13490631|gb|BG517395.1|BG517395
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTACACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|67030385|gb|CO459134.1|CO459134
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|37379391|gb|CF626441.1|CF626441
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|9824896|gb|BE574993.1|BE574993
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211133111|gb|FL066433.1|FL066433
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|18178384|gb|BM379594.1|BM379594
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|60355684|gb|DN222657.1|DN222657
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211202205|gb|FL066463.1|FL066463
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGGAAAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGG-AAAC
EST: gi|211491361|gb|FL079149.1|FL079149
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCT
EST: gi|211133107|gb|FL066429.1|FL066429
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGAC
EST: gi|211133106|gb|FL066428.1|FL066428
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|60349499|gb|DN216472.1|DN216472
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211497142|gb|FL079187.1|FL079187
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACT-GGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGG
EST: gi|211491366|gb|FL079154.1|FL079154
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACT
EST: gi|211479829|gb|FL079097.1|FL079097
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCAT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCAT
EST: gi|213192645|gb|FM191594.1|FM191594
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211494250|gb|FL079169.1|FL079169
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAG
EST: gi|13389425|gb|BG462716.1|BG462716
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAAC
EST: gi|16918257|gb|BM073664.1|BM073664
EST:     AGCGCGCAAGATACCCTTCACGATCAGACGGTATTTACCTGAATAGTAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAAC
genomic: AGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTG-AT-GGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAAC
EST: gi|26457622|gb|CA829205.1|CA829205
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211204768|gb|FL066469.1|FL066469
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|166614089|gb|EG233034.1|EG233034
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGTACGAGCTCATTGTGGA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAG-ACGAGCTCATTGTGGA
EST: gi|211494252|gb|FL079171.1|FL079171
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTC
EST: gi|211479827|gb|FL079095.1|FL079095
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAG
EST: gi|211485595|gb|FL079122.1|FL079122
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAWGACGAGCTCATTGTGGAGGACTCCTGGAAAC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTA-GACGAGCTCATTGTGGAGGACTCCTGGAAAC
EST: gi|211485590|gb|FL079117.1|FL079117
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|33092908|gb|CF052902.1|CF052902
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|113703933|gb|EE681437.1|EE681437
EST:     ACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCCCATTGTGGAGGACTCCTGGAAACG
genomic: ACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|33092463|gb|CF052457.1|CF052457
EST:     ACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: ACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|20301294|gb|BQ164237.1|BQ164237
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211131248|gb|FL066400.1|FL066400
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGTTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211491358|gb|FL079146.1|FL079146
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCC
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCC
EST: gi|60343431|gb|DN210404.1|DN210404
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211491357|gb|FL079145.1|FL079145
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGA
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGA
EST: gi|33467778|gb|CF244827.1|CF244827
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|40485863|gb|CK394777.1|CK394777
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|30087312|gb|CB885520.1|CB885520
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|32915187|gb|CF019999.1|CF019999
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211220949|gb|FL461815.1|FL461815
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|32910381|gb|CF015193.1|CF015193
EST:     GGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211485589|gb|FL079116.1|FL079116
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATT
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATT
EST: gi|37374244|gb|CF623466.1|CF623466
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|211008103|gb|FL135927.1|FL135927
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGG
EST: gi|211497138|gb|FL079183.1|FL079183
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|32834240|gb|CD973918.1|CD973918
EST:     ACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: ACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|60340477|gb|DN207450.1|DN207450
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
EST: gi|16379488|gb|BI992976.1|BI992976
EST:     AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAG                         CTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 818

ATTGCAATGAAGGAGCTGAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 554

ATTGCAATGAAGGAGCTGAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 585

ATTGCAATGAAGGAGCTGAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 544

ATTGCAATGAAGGAGCTGAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACTTACCTGATGGAAGgtgagattcc ... tttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatgaatacttttacaatgtagtcatctttaattactttgttttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT
                              ctttaat  putative branch site (score: 544)
                                       ctttgtttt  putative PPT
                            atctttaattactttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagattccatggaaaagcacatacttcttttttatgaatacttttacaatgtagtcatctttaattactttgttttaaaacagCTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGACGCGGATCTACTTGGCATGGAAAGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA