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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgttggtacaccttgtcactggtctaaagcatccaccttaccattgctgatcggctagtttatgtttctaatatttgtaaccatcttattatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG

Basic information

species Zea mays
transcript GRMZM2G086052_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086052_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g40620.1 (Oryza sativa), 3'ss of exon 5
--agtgttggtacaccttgtcactggtctaaagcatccaccttaccat-tgctgatcggctagtttatgtttctaatatttgtaaccatcttattatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG
   |  ||  |  |  |      |     ||   ||   | ||   |  |  ||||| | |   ||||| || |  | ||||||    |   ||| | |||||  ||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
gccgcctttatctagttctctttttcgtcaagctattttctttttgacatcttgatcagatttcttatgcttgttctgtttgtatatgt---attctctgcagTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542289|gb|BU092727.1|BU092727
EST:     TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGAT                         CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
EST: gi|93281358|gb|EB673622.1|EB673622
EST:     TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTCCCCTCAGGAT                         CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
EST: gi|26559508|gb|CA831743.1|CA831743
EST:     -GGAGCCCCTGTTTGTTGG-ATGCCTCCCTC-AACAGGTTCCCTCAGGAT                         CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
EST: gi|87156799|gb|DY401588.1|DY401588
EST:     TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGAT                         CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
EST: gi|71297664|gb|DR784782.1|DR784782
EST:     TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCANGAT                         CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATC
EST: gi|76293021|gb|DV032589.1|DV032589
EST:     TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGAT                         CACCAACCATAATCATTGCACATGAATTCTATG
genomic: TGGAGCCCCTGTTTGTTGGCATGCCTCCCTCGAACAGGTTCCCTCAGGATgtatgaggct ... ttatatgcagCACCAACCATAATCATTGCACATGAATTCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgatcggctagtttatgtttctaatatttgtaaccatcttattatatgcagCACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG
                               ttgtaac  putative branch site (score: 2)
                                        tcttatt  putative PPT
               tttatgtttctaatat  TA-rich tract