1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctatatatatcatgtttagctcttgccctcggaagctttatttccaatgatctgactggtcttcctctacgattgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
species | Zea mays |
transcript | GRMZM2G085602_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGEST: gi|32829902|gb|CD969580.1|CD969580
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGEST: gi|45567661|gb|CK985682.1|CK985682
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCGGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGEST: gi|71429534|gb|DR810584.1|DR810584
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGEST: gi|33097708|gb|CF057668.1|CF057668
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGEST: gi|211404105|gb|FL439001.1|FL439001
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
EST: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTG CACATGCTAATCTTCCGGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
genomic: CCCAGAGCACAGGCAGAATGTTGCAGAGGGCTTGAATCGGGCTGTCCTTGgtatgctata ... ttgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAG
ctcggaagctttatttccaatgatctgactggtcttcctctacgattgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
tttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatatatatcatgtttagctcttgccctcggaagctttatttccaatgatctgactggtcttcctctacgattgatgacagCACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG