1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttctggtaatagtttatgtacctctagaaattaaatcaatacagcactgctggttgaaatatttattgacgttatttatcttggcattttcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAGTTGAACTTTTAAAAGCCACGAAGGACATTGAATCACAGTTGGAAAAG
species | Zea mays |
transcript | GRMZM2G085438_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|78123598|gb|DV541982.1|DV541982
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|110518313|gb|EE022900.1|EE022900
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: CAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|60349431|gb|DN216404.1|DN216404
genomic: CAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAAGAACAGCEST: gi|78082085|gb|DV510497.1|DV510497
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAA-GAACAGC
EST: GAAAGATATAGGAGATTTGGCATTTTGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|40333901|gb|CK367971.1|CK367971
genomic: GAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGC--------ATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|110523789|gb|EE027973.1|EE027973
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|86468691|gb|DY235061.1|DY235061
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|71759897|gb|DR957834.1|DR957834
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|37375743|gb|CF624330.1|CF624330
genomic: AAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGC--------ATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
cactgctggttgaaatatttattgacgttatttatcttggcattttcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAGTTGAACTTTTAAAAGCCACGAAGGACATTGAATCACAGTTGGAAAAG
tattgac putative branch site (score: 2)
ttttcattttc putative PPT
aaatatttattgacgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctggtaatagtttatgtacctctagaaattaaatcaatacagcactgctggttgaaatatttattgacgttatttatcttggcattttcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAGTTGAACTTTTAAAAGCCACGAAGGACATTGAATCACAGTTGGAAAAG
cttctgg
- - - - - - - - - - - - - - - - - - - - - - - actgctg