1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatctcccttggaagtcttttttcatgacttcttatgggtatatttttgtctcatctttcttgttcagtgattttataagactggcttctctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATATTGTCATGTCTTCTTCCTGAGGCGAAGTTATTTCCGCAGAAAGATATAG
species | Zea mays |
transcript | GRMZM2G085438_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|71759858|gb|DR957795.1|DR957795
genomic: CTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: GGATGGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|78106711|gb|DV525129.1|DV525129
genomic: GGAT-GGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: GCAACAAACA-GAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAEST: gi|88752776|gb|DY536917.1|DY536917
genomic: GCAACAA-CAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGA
EST: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|78123598|gb|DV541982.1|DV541982
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: AGCAACAACAAGAAGGGGATGGGGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|71439067|gb|DR820117.1|DR820117
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|78076592|gb|DV505026.1|DV505026
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|40333901|gb|CK367971.1|CK367971
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: GGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATAEST: gi|31354329|gb|CD438686.1|CD438686
genomic: GGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
EST: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAG ATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
genomic: AGCAACAACAAGAATGGGATGGTGTGCTTCTTGTCGCACCTATGTGCAAGgtatttctca ... ctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATA
tttgtctcatctttcttgttcagtgattttataagactggcttctctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATATTGTCATGTCTTCTTCCTGAGGCGAAGTTATTTCCGCAGAAAGATATAG
cttctcttt CT-rich tract
tgattttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctcccttggaagtcttttttcatgacttcttatgggtatatttttgtctcatctttcttgttcagtgattttataagactggcttctctttggcaagATTTCAGAAGATGTAACACCACCTGCACCTGTATTGAAGGCACTGAGCATATTGTCATGTCTTCTTCCTGAGGCGAAGTTATTTCCGCAGAAAGATATAG
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