1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caacttagcttttgtagaaagcgaataaataatgacaacttcgtttaaggatgtgcttgctcgactgctggcagttcaatattagttggttttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAAACCTCGGAGGTTCAAAACATTTGTAGAAGCACTG
species | Zea mays |
transcript | GRMZM2G085427_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACTTGATGC-AAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAAEST: gi|78119579|gb|DV537963.1|DV537963
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAA
EST: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAAEST: gi|211048831|gb|FL187591.1|FL187591
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAA
EST: TCACTTGATGCAAAATACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCT
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCT
taaggatgtgcttgctcgactgctggcagttcaatattagttggttttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAAACCTCGGAGGTTCAAAACATTTGTAGAAGCACTG
ttttgat putative branch site (score: 84)
ttcaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacttagcttttgtagaaagcgaataaataatgacaacttcgtttaaggatgtgcttgctcgactgctggcagttcaatattagttggttttgatgtagGTGGTCTCTGCTTGAGAAATTTAGCTGCACTGCATCAAAGTTGCATCTCAAACCTCGGAGGTTCAAAACATTTGTAGAAGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - -gcttttg
- - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg