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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattgtgaaaaaacaatataaccaaggtcgttgcatgttttcctttgaatgtttgctcagaaacatgggccattacttcgttgtttacagGGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAG

Basic information

species Zea mays
transcript GRMZM2G085000_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40303424|gb|CK347811.1|CK347811
EST:     GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG                         GGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG
EST: gi|148937629|gb|EC881822.2|EC881822
EST:     GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG                         GGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG
EST: gi|60352714|gb|DN219687.1|DN219687
EST:     GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG                         GGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcctttgaatgtttgctcagaaacatgggccattacttcgttgtttacagGGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAG
                                        cttcgtt  CT-rich tract
        tttgaat  TA-rich tract