Sequence
atgc intronic sequence ATGC exonic sequencegtaaattgcttctaccaactaactctacatttcatttctcttatagagataattttgtttaatgaccatgtagcaaatgcttaattatttggttatttaaaaagtacttgttctgcacttgtgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G084716_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 3'ss of exon 5
gtaaattgcttctaccaactaactctacatttcatttctcttatagagataattttgtttaatgaccatgtagcaaatgcttaattatttggttatttaaaaagtacttgttctgcacttgtgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
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--------------------------gtaagttgcttatatctttaaaagcactttgtatgctttgaatgacctatttaacacatt-catgattatgtaaatagtgtctggttt-------tgatggtgaatttcttttgcagATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAG
upper sequence: GRMZM2G084716_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G31450.1 (Glycine max), 3'ss of exon 7
gtaaattgcttctaccaactaactctacatttcatttctcttatagagataattttgtttaatgaccatgtagcaaatgcttaattatttggttatttaaaaagtacttgtt-ctgcacttg---tgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
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-----------------------------------------------------------------gtaagtatcaacttttcgcccaaatttgcctgaatgtaatttttgttgctataattaacatgacatgggtaatgtattgcagATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAG
upper sequence: GRMZM2G084716_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G36110.1 (Glycine max), 3'ss of exon 6
gtaaattgcttctaccaactaactctacatttcatttctcttatagagataattttgtttaatgaccatgtagcaaatgcttaattatttggttatttaaaaagtacttgttctgcacttgtgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
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-------------------------------------------------------------gtaagtataaacttttcgctcaatttgcctga-atctagtttttgttgcaataattaacatgacatgggtaatgtattgcagATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggttatttaaaaagtacttgttctgcacttgtgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
tttcttttgc CT-rich tract
tatttaaaaagtactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattgcttctaccaactaactctacatttcatttctcttatagagataattttgtttaatgaccatgtagcaaatgcttaattatttggttatttaaaaagtacttgttctgcacttgtgatgctggatttcttttgcagATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG