Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcctgggacctttctccatccgtgacgcttttacttctttcgtgattgttcgacacatttggttatttatgttctgtttgtttcacccacctttagtgctcacaccaaaggaatttcctttttgtgtactttcttttccacctatcatgctgtcttggtaaggaaatgttcgtctgtttctttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTGGAATGAAGTACTACAATACCT

Basic information

species Zea mays
transcript GRMZM2G082855_T05
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 3'ss of exon 5
gtgagcttcctgggacctttctccatccgtgacgcttttacttctttcgtgattgttcgacacatttggttatttatgttctgtttgtttcacccacctttagtgctcacaccaaaggaatttcctttttgtgtactttcttttccacctatcatgctgtcttggtaaggaaatgttcgtctgtttctttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTGGAATGAAGTACTACAATACCT
                                                                                            |   ||    |     |||      |   |  | |||| || |  ||   | | ||   |  |    |  || |||  ||   ||| |   ||   ||| | |||||| ||||| |||||| | ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||||
--------------------------------------------------------------------------------------------cgtgccacgggaa---acatggcttgctgtgtcattttttgcatcttaagtactactagttcttacttactgataa--aatccttccttaattatcttggaatagGGACCTGGCACAGAACCAGCTTACAGGCGATATCCCAAGGCTCATATACTGGAATGAAGTTCTGCAATACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86472326|gb|DY238696.1|DY238696
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|148934014|gb|EC878019.2|EC878019
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|148940443|gb|EC885241.2|EC885241
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|149079906|gb|EE168912.2|EE168912
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|148964982|gb|EC906062.2|EC906062
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|148941048|gb|EC885905.2|EC885905
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|149096378|gb|EE182110.2|EE182110
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|101383199|gb|EB813654.1|EB813654
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
EST: gi|148957491|gb|EC903572.2|EC903572
EST:     ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTT                         GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG
genomic: ACCGGACCCATCCCCTCCACACTGTCACAGATTCCAAATCTCAAGACCTTgtgagcttcc ... tttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccacctatcatgctgtcttggtaaggaaatgttcgtctgtttctttgtattagGGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTGGAATGAAGTACTACAATACCT
                                 ttcgtctgtttcttt  CT-rich tract
                                             tttgtatta  TA-rich tract