1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgtatttcatgttgctcaataggtatttagattccgaaggaaaatctctaggccttcaatcagtttcataagttatcctgccacatcagttacttagatttttcttcataacttcatattaatttttttcctgccttttttctttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCAGCGACACGCCTCACACACCAGAGGGAGGAAACGGCGGCGGCGGCGCAG
species | Zea mays |
transcript | GRMZM2G082809_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAG GTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCEST: gi|78086462|gb|DV514855.1|DV514855
genomic: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAGgtaatgtatt ... tttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
EST: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAG GTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCEST: gi|110191211|gb|EC873109.1|EC873109
genomic: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAGgtaatgtatt ... tttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
EST: AAGAACCCCCACCAAAGGTTGAACTTAAGAAG GTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCEST: gi|60348511|gb|DN215484.1|DN215484
genomic: AAGAACCCCCACCAAAGGTTGAACTTAAGAAGgtaatgtatt ... tttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
EST: AAAGGTTGAACTTAAGAAG GTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCEST: gi|148930776|gb|EC873110.2|EC873110
genomic: AAAGGTTGAACTTAAGAAGgtaatgtatt ... tttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
EST: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAG GTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
genomic: CCGTGCCGAGCTTCTACCAAGAACCCCCACCAAAGGTTGAACTTAAGAAGgtaatgtatt ... tttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGC
atttttcttcataacttcatattaatttttttcctgccttttttctttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCAGCGACACGCCTCACACACCAGAGGGAGGAAACGGCGGCGGCGGCGCAG
tattaat putative branch site (score: 131)
cttcatattaattttt CT-rich tract
tcttcataacttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtatttcatgttgctcaataggtatttagattccgaaggaaaatctctaggccttcaatcagtttcataagttatcctgccacatcagttacttagatttttcttcataacttcatattaatttttttcctgccttttttctttctcgcagGTGCCTCCAACTCGTGCCAAGTCACCAAAGCTGACGCGGAGGAAGAGCTGCAGCGACACGCCTCACACACCAGAGGGAGGAAACGGCGGCGGCGGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA