Sequence
atgc intronic sequence ATGC exonic sequencegtaaatccttttgtgcatagcaagctgatcctgccaatttcacatacttcaacaccgatgatatattttactctgcgtgcagCTGAAAAATGATGGCGACTTCCTCTTCTTCCTGGCGGATGCGGCAGCGACAACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G082502_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g36780.1 (Oryza sativa), 3'ss of exon 5
---------------------------------------------------------gtaaatccttttgtgcatagcaagctgatcctgccaatttcacatacttcaacaccgatgatatattttactct--gcgtgcagCTGAAAAATGATGGCGACTTCCTCTTCTTCCTGGCGGATGCGGCAGCGACAACC
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gtaaccccttgtgattgaggacttgggatgtgcattttttacttttgtaacataaaagtacctctagttctacacgatgaatacaatctctctgtttccaggattttcgca----tgctttaatccacttttgatttgcagTTGAAAAATGATGGTGATTTCCTGTTCTTCCTGGCAGATGCGGCGGCCATAGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74233811|gb|DT641725.1|DT641725EST: AGCTCCGGCTGGAGAGTCACTCGGTGAAGGCTCTATTTGGAGCACAGACG CTGAAAAATGATGGCGACTTCCTCTTCTTCCTGGCGGATGCGGCAGCGACA
genomic: AGCTCCGGCTGGAGAGTCACTCGGTGAAGGCTCTATTTGGAGCACAGACGgtaaatcctt ... ctgcgtgcagCTGAAAAATGATGGCGACTTCCTCTTCTTCCTGGCGGATGCGGCAGCGACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcctgccaatttcacatacttcaacaccgatgatatattttactctgcgtgcagCTGAAAAATGATGGCGACTTCCTCTTCTTCCTGGCGGATGCGGCAGCGACAACC
agctgat putative branch site (score: 4)
ttttactct putative PPT
atgatatattttact TA-rich tract