1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttctacaagccctagaaattcttctattggagaagtaaaaaacaagacttaattatgccctttttgcacctgcagGTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTTGGTGTTTATTGTGATGGAGAATTCAATTTACGATGTGG
species | Zea mays |
transcript | GRMZM2G082181_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACTGGGGACGCGGTTCTACCTGATTATCAAACTTGGAATCTTCCAATAT GTGATCATAAAGEST: gi|71770031|gb|DR967968.1|DR967968
genomic: GACTGGGGACGCGGTTCTACCTGATTATCAAATTTGGAATCTTCCAATATgtatttctac ... gcacctgcagGTGATCATAAAG
EST: GACTGGGGACGCGGTTCTACCTGATTATCAAATTTGGAATCTTCCAATAT GTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTTEST: gi|78089544|gb|DV517918.1|DV517918
genomic: GACTGGGGACGCGGTTCTACCTGATTATCAAATTTGGAATCTTCCAATATgtatttctac ... gcacctgcagGTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTT
EST: GACTGGGGACGCGGTTCTACCTGATTATCAAATTTGGAATCTTCCAATAT GTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTT
genomic: GACTGGGGACGCGGTTCTACCTGATTATCAAATTTGGAATCTTCCAATATgtatttctac ... gcacctgcagGTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTT
cttctattggagaagtaaaaaacaagacttaattatgccctttttgcacctgcagGTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTTGGTGTTTATTGTGATGGAGAATTCAATTTACGATGTGG
acttaat putative branch site (score: 4)
ccctttttgcacct putative PPT
taaaaaacaagactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctacaagccctagaaattcttctattggagaagtaaaaaacaagacttaattatgccctttttgcacctgcagGTGATCATAAAGACCCTCACAGCCACCTTATCTCTTCTTCTAGAATCTTTTGGTGTTTATTGTGATGGAGAATTCAATTTACGATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA