1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtactagctattccctctcttcatatatagttatatttctctgttcttatatttatttgtttctgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAG
species | Zea mays |
transcript | GRMZM2G082099_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATTGAAGCACCTGCTTCGAGACAAATCAGAATTGATGGGGCTCTCAAG GTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAGCAGEST: gi|32928776|gb|CF033588.1|CF033588
genomic: TGATTGAAGCACCTGCTTCGAGACAAATCAGAAATGATGGGGCTCTCAAGgtctgtacta ... tgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAA
EST: TGATTGAAGCGCCTGCTTCGAGACAAATCAGAATTGATGGGGCTCTCAAG GTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAAEST: gi|61118493|gb|DN559454.1|DN559454
genomic: TGATTGAAGCACCTGCTTCGAGACAAATCAGAAATGATGGGGCTCTCAAGgtctgtacta ... tgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAA
EST: TGATTGAAGCACCTGCTTCGAGACAAATCAGAATTGATGGGGCTCTCAAG GTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAGCAGEST: gi|32934388|gb|CF039200.1|CF039200
genomic: TGATTGAAGCACCTGCTTCGAGACAAATCAGAAATGATGGGGCTCTCAAGgtctgtacta ... tgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAA
EST: TGATTGAAGCGCCTGCTTCGAGACAAATCAGAATTGATGGGGCTCTCAAG GTTGGACAGAAACGTGGAA
genomic: TGATTGAAGCACCTGCTTCGAGACAAATCAGAAATGATGGGGCTCTCAAGgtctgtacta ... tgtactatagGTTGGACAGAAACGTGGAA
cttcatatatagttatatttctctgttcttatatttatttgtttctgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAG
tttgtttct CT-rich tract
tatatagttatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtactagctattccctctcttcatatatagttatatttctctgttcttatatttatttgtttctgtactatagGTTGGACAGAAACGTGGAAGATTGGTTGCAGATCTAGAAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG