1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttatacatggcgtagccaattagccatgcatagcaagaactatgtgttggaaggctggaattctaaatcagtccctaactcttcgttactgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGGCGCGTATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGA
species | Zea mays |
transcript | GRMZM2G081915_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGAAAG GTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGEST: gi|149112537|gb|EE295397.2|EE295397
genomic: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAGgtattatgct ... ctgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCG
EST: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAG GTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGGCEST: gi|149005339|gb|EE039890.2|EE039890
genomic: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAGgtattatgct ... ctgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGGC
EST: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAG GTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGC
genomic: CAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAGgtattatgct ... ctgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGC
gtgttggaaggctggaattctaaatcagtccctaactcttcgttactgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGGCGCGTATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGA
ccctaac putative branch site (score: 15)
aattctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttatacatggcgtagccaattagccatgcatagcaagaactatgtgttggaaggctggaattctaaatcagtccctaactcttcgttactgaaccaagGTTGCCGACGTGTGGTCGTGTGGGGTAACCCTCTACGTGATGCTGGTCGGCGCGTATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA