1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catatatatgtgtggtgctcatgaattcaacatatatgcattgtccttcattctataaacaaaagttaaagggcggtgaactttgcatgcatgcatgcagGTGCAGAAGCACCTCCAGATGAGGGTTGAAGCCCAGGGGAAGTACATGCAGTCCATCGTGGAGAAAGCATACCAAGCCCTCGGGTCCAGCGACTGCGCCA
species | Zea mays |
transcript | GRMZM2G081671_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTAAGGATCCAAATGGAAGTCCAAAGAAGGCTCCATGGAGAACTAGAG GTGCAGAAGCACCTCCAGATGAGGGTTGAAGCCCAGGGGAAGTACATGCAG
genomic: CCTTAAGGATCCAAATGGAAGTCCAAAGAAGGCTCCATGGAGAACTAGAGgtacatgcat ... atgcatgcagGTGCAGAAGCACCTCCAGATGAGGGTTGAAGCCCAGGGGAAGTACATGCAG
cttcattctataaacaaaagttaaagggcggtgaactttgcatgcatgcatgcagGTGCAGAAGCACCTCCAGATGAGGGTTGAAGCCCAGGGGAAGTACATGCAGTCCATCGTGGAGAAAGCATACCAAGCCCTCGGGTCCAGCGACTGCGCCA
tataaacaaaagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatatatgtgtggtgctcatgaattcaacatatatgcattgtccttcattctataaacaaaagttaaagggcggtgaactttgcatgcatgcatgcagGTGCAGAAGCACCTCCAGATGAGGGTTGAAGCCCAGGGGAAGTACATGCAGTCCATCGTGGAGAAAGCATACCAAGCCCTCGGGTCCAGCGACTGCGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - -gtggtgc
- - - - - - - - - -catgaat
- - - - - - - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc