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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacatgcatccagacggttctgggaattgttgttagatgcggaaacgatgtgtgactcaaaatttctgaaacatggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG

Basic information

species Zea mays
transcript GRMZM2G080375_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 5
gtaacacatgcatccagacggttctgg--gaattgttgttagatgcggaa-acgatgtgtgactcaaaatttctgaaacatggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG
||||| ||       | |  | | |     |||  ||||  |||||  ||  | || | | || |||| ||  ||||| ||| ||||||||||| ||||| || || ||||| || ||||| || |||||||||||||| || ||||||||||| |||
gtaactcacaggctgataatgatgtaaataaatgtttgtgggatgcccaatgctatctataacacaaacttgttgaaa-atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACCATAGATAACGACATTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234373|gb|DT642287.1|DT642287
EST:     ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGT
EST: gi|116813643|gb|EC856113.1|EC856113
EST:     ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|33099629|gb|CF059589.1|CF059589
EST:     ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGGGGCCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|149087521|gb|EE176918.2|EE176918
EST:     TATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTTCTGTA-TTTATGAG                         GAAGTCCGGAGACGGGGTCTCAAGTGCTCTGGTGTCCGTGTCCCAAAGACT
genomic: TATTATCGGAGGCGATGGCACTCAGAAAGGCGCTT-CTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|148980656|gb|EE027274.2|EE027274
EST:     ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|87153260|gb|DY398049.1|DY398049
EST:     ATATTATCGGAGGCGACGGGACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGCGGCCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|211450005|gb|FL281917.1|FL281917
EST:     ATATTATCGGAGACGACGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGCGGCCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
EST: gi|211450006|gb|FL281918.1|FL281918
EST:     ATATTATCGGAGACGACGGCACTCAGAAAGGCGCTTCTGTAATTTATGAG                         GAAGTCCGGAGACGCGGCCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT
genomic: ATATTATCGGAGGCGATGGCACTCAGAAAGGCGCTTCTGTAATTTATGAGgtaacacatg ... atggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgttagatgcggaaacgatgtgtgactcaaaatttctgaaacatggtttcagGAAGTCCGGAGACGGGGTCTCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG
                             tcaaaattt  TA-rich tract