1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcagcattctttatcattaattttggttacttcttcagcagtggatcttcaatatgtgttacctttttgtgaaatttgaccttgaccttttctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCTGGGGATAGGCGTAGGACCGTTATGAGGCCACCACAAGTTCTTAGGGAGG
species | Zea mays |
transcript | GRMZM2G080048_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCTEST: gi|6194479|gb|AW146583.1|AW146583
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
EST: TCCCTACATACCCTTGGGAGGGAACTGACCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTEST: gi|19822348|gb|BQ048372.1|BQ048372
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
EST: TCCCTACATACCC-TGGGAGGGAACTGATCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
tcttcaatatgtgttacctttttgtgaaatttgaccttgaccttttctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCTGGGGATAGGCGTAGGACCGTTATGAGGCCACCACAAGTTCTTAGGGAGG
ccttgac putative branch site (score: 527)
ccttttctgttcc CT-rich tract
tttttgtgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagcattctttatcattaattttggttacttcttcagcagtggatcttcaatatgtgttacctttttgtgaaatttgaccttgaccttttctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCTGGGGATAGGCGTAGGACCGTTATGAGGCCACCACAAGTTCTTAGGGAGG
gcagcat
- - - - - - - - - - ttttggt
- - - - - - - - - - - - - - - - cttcagc
- - - - - - - - - - - - - - - - - - - - gtggatc