1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtttgcatggttctcaacttctcaacagatgttaccatgtcattttgccttcgttgctaattgttcatacacttggcaacacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACAAACTGAAGCTTCCTTCATTTCTGTCTAGTGAAGCTCATTCCCTCCTGA
species | Zea mays |
transcript | GRMZM2G080001_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACEST: gi|71433480|gb|DR814530.1|DR814530
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACEST: gi|71772140|gb|DR970077.1|DR970077
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACEST: gi|148942228|gb|EC887236.2|EC887236
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACEST: gi|71762096|gb|DR960033.1|DR960033
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACEST: gi|76282647|gb|DV022215.1|DV022215
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
EST: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAG CCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
genomic: CTGACTGGTGGAGCGTGGGAATCCTGCTGTTTGAAATGCTTACAGGCAAGgtgagtttgc ... cacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGAC
ccatgtcattttgccttcgttgctaattgttcatacacttggcaacacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACAAACTGAAGCTTCCTTCATTTCTGTCTAGTGAAGCTCATTCCCTCCTGA
tgctaat putative branch site (score: 68)
taattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttgcatggttctcaacttctcaacagatgttaccatgtcattttgccttcgttgctaattgttcatacacttggcaacacactgcagCCCCCATTTGTTGGGAATAGGGAGAAAGTTCAGCAGAAGATTATAAAAGACAAACTGAAGCTTCCTTCATTTCTGTCTAGTGAAGCTCATTCCCTCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA