1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttactgactgaaatgtgctcgaactatagacatttttagcaagatcattcatttatatgtcattgaattgaaggtattccttcatgtaaaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCTGGGAAGGCATTGGAAAGGATGATAAAGAATGTTATGAATGGCAGAGGGGAAGGTGCTGATAACG
species | Zea mays |
transcript | GRMZM2G079452_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAG GTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAEST: gi|76012260|gb|DT939430.1|DT939430
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAA
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAG GTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCEST: gi|71429968|gb|DR811018.1|DR811018
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACC
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAA GTAAACTTTTTGAGCAAGCTCGTTGCEST: gi|78090608|gb|DV518982.1|DV518982
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGAGCAAGCTCGTTGC
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCTCTGAGGCAGAG GTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCTGGGAAGGCATTGGAAEST: gi|149096864|gb|EE182658.2|EE182658
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCTGGGAAGGCATTGGAA
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAG GTAAACTTTTTGAAGCA-GCTCGTTGCTCTTAAAACTGGEST: gi|71444932|gb|DR825982.1|DR825982
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGA-GCAAGCTCGTTGCTCTTAAACCTGG
EST: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAG GTAAACTTTTTGAGCAAGCTCGTTGC
genomic: TGTTAGATGAGAGAAATGATCGTGGTTTGACTACCCTCCCTGAGGCAGAGgtacttttaa ... aaattgacagGTAAACTTTTTGAGCAAGCTCGTTGC
atcattcatttatatgtcattgaattgaaggtattccttcatgtaaaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCTGGGAAGGCATTGGAAAGGATGATAAAGAATGTTATGAATGGCAGAGGGGAAGGTGCTGATAACG
atttatatgtcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttactgactgaaatgtgctcgaactatagacatttttagcaagatcattcatttatatgtcattgaattgaaggtattccttcatgtaaaattgacagGTAAACTTTTTGAGCAAGCTCGTTGCTCTTAAACCTGGGAAGGCATTGGAAAGGATGATAAAGAATGTTATGAATGGCAGAGGGGAAGGTGCTGATAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -ctgactg
- - - - - - - -tgtgctc
- - - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattg