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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggggcttagtttcttcttaagatttttttgctgaaatcattgatttactaggtgtttttgtctcctgtaatttagtcaggtggttcattttgatgtagGGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATGACAATAGTCCCAAAACTTGGCATGAATGATGTTTATCTGGCTTACCTTC

Basic information

species Zea mays
transcript GRMZM2G079236_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079236_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g25310.2 (Oryza sativa), 3'ss of exon 4
taggggcttagtttcttcttaagatttttttgctgaaatcattgatttactaggtgtttttgtctcctgtaatttagtcaggtggttcattttgatgtagGGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATGACAATAGTCCCAAAACTTGGCATGAATGATGTTTATCTGGCTTACCTTC
     |||  ||   ||| |         |  |    |   |||| ||   || | || |   ||| | ||||  |||    |||||   |||||  |||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||  | |||||||||||||     |||||||||||||| |||||||
ccacagctatgtactttcatttatcacaatgtcaaccacttttgagtttgcagttcttgtgtcctcttttaatccagttttatggtttcctttgacatagGGTGTAATGATTACACATGGAAATATGGTGGCCACAACTGCAGCTGTCATGACAATCATACCAAAACTTGGCACAGGGGATGTTTATCTGGCATACCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32846288|gb|CD985969.1|CD985969
EST:     ACTGGTCTTCCCAAG                         GGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATG
genomic: ACTGGTCTTCCCAAGgtatactgtt ... tttgatgtagGGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactaggtgtttttgtctcctgtaatttagtcaggtggttcattttgatgtagGGTGTAATGATCACACATGGCAACATGGTGGCCACAACTGCAGCAGTCATGACAATAGTCCCAAAACTTGGCATGAATGATGTTTATCTGGCTTACCTTC
                                            ttttgat  putative branch site (score: 4)
                                        ttcatttt  CT-rich tract
                      tgtaattta  TA-rich tract